ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast p... 37 0.012
2SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) ... 31 0.84
3ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membra... 30 1.1
4ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plas... 30 1.9
5SCRB_SALTY (P37075) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) ... 28 4.1
6ZN493_HUMAN (Q6ZR52) Zinc finger protein 493 28 4.1
7PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4... 28 5.4
8SL9A3_HUMAN (P48764) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exc... 28 7.1
9DNSL1_HUMAN (P49184) Deoxyribonuclease I-like 1 precursor (EC 3.... 28 7.1
10DNSL1_CERAE (Q2QDF1) Deoxyribonuclease I-like 1 precursor (EC 3.... 28 7.1
11YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I 27 9.2

>ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast precursor (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
            ATPase 1)
          Length = 1020

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = -1

Query: 374  IVIGFIGMPIAAIVKLIPVGS 312
            I++GF+GMP+AA +K+IPVGS
Sbjct: 999  IILGFLGMPVAAALKMIPVGS 1019



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>SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 465

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 219 TTAPELHWRHQPLVLLPD 272
           ++A  LHWRH+P+ L+PD
Sbjct: 73  SSADLLHWRHEPIALMPD 90



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>ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membrane-type (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 2)
          Length = 1014

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -1

Query: 374  IVIGFIGMPIAAIVKLIPV 318
            I IGF+GMPIAA +K IPV
Sbjct: 996  IFIGFLGMPIAAGLKTIPV 1014



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>ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plasma membrane-type|
            (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7)
          Length = 1015

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -1

Query: 374  IVIGFIGMPIAAIVKLIPV 318
            I +GF+GMPIAA +K IPV
Sbjct: 997  IFVGFLGMPIAAGLKKIPV 1015



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>SCRB_SALTY (P37075) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 466

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 234 LHWRHQPLVLLPD 272
           LHW+H+P+ L+PD
Sbjct: 79  LHWQHEPIALMPD 91



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>ZN493_HUMAN (Q6ZR52) Zinc finger protein 493|
          Length = 646

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = +1

Query: 13  QAYHTISSF--NTPRKIT*KKKLQGVYQTLLKNQAHSLGSSSKDQMQKKKEGHRFT*I-- 180
           + Y+ ++ +   T  KI    K   V+  LL +  H+   + K   + KK G  F  +  
Sbjct: 9   EGYNELNQYLTTTQSKIFQCDKYVKVFHKLLNSNRHNTKHTGKKPFKCKKCGKSFCMLLH 68

Query: 181 ----KRINSRKNSFLCSQ 222
               KRI+ R+NS+ C +
Sbjct: 69  LCQHKRIHIRENSYRCEE 86



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>PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4 (Ligand of|
           Numb-protein X 4) (SEMACAP3-like protein)
          Length = 1036

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 120 KTVGLILQKCLIDPL*FLF--SCYFPWSVET*NCMISLQP 7
           K  G +L++ L  P   +F  SC  PW+V    C +  QP
Sbjct: 19  KLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQP 58



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>SL9A3_HUMAN (P48764) Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3)|
           (NHE-3) (Solute carrier family 9 member 3)
          Length = 834

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 201 LSAINPFYLGESMAFFFLLHLIFRGRAKTVGLILQKCLID 82
           +SA+NPF    + AF  LL L+F    + +G++LQ  L++
Sbjct: 356 ISAVNPFIWTWNTAFV-LLTLVFISVYRAIGVVLQTWLLN 394



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>DNSL1_HUMAN (P49184) Deoxyribonuclease I-like 1 precursor (EC 3.1.21.-) (DNase|
           I-like 1) (Muscle-specific DNase I-like) (DNase X) (XIB)
          Length = 302

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 237 HWRHQPLVLLPDFSS*PEISCRLLLRTHRDKLDYRSD 347
           HW+ + ++LL DF++     C  L +   DKL+ R++
Sbjct: 171 HWQSKDVILLGDFNA----DCASLTKKRLDKLELRTE 203



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>DNSL1_CERAE (Q2QDF1) Deoxyribonuclease I-like 1 precursor (EC 3.1.21.-) (DNase|
           I-like 1) (DNase X)
          Length = 302

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 237 HWRHQPLVLLPDFSS*PEISCRLLLRTHRDKLDYRSD 347
           HW+ + ++LL DF++     C  L +   DKL+ R++
Sbjct: 171 HWQSKDVILLGDFNA----DCASLTKKRLDKLELRTE 203



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>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I|
          Length = 218

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 103 NQAHSLGSSSKDQMQKKKEGHRFT*IKRINSRKNS---FLCSQQ 225
           N   S GSS +   ++KK+   +  ++RIN R      F C QQ
Sbjct: 42  NMKASFGSSKRYDERQKKKRSEYRRLRRINQRNRDKFCFACRQQ 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,390,071
Number of Sequences: 219361
Number of extensions: 831325
Number of successful extensions: 1678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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