ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl56d03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ310840.1|HVU310840 Hordeum vulgare partial CA1 gene for P-type ATPase Length = 1686 Score = 137 bits (69), Expect = 3e-29 Identities = 69/69 (100%) Strand = Plus / Minus Query: 306 ctactgagaacccaccgggataagcttgactatcgcagcgataggcatgcctatgaaacc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 ctactgagaacccaccgggataagcttgactatcgcagcgataggcatgcctatgaaacc 1627 Query: 366 gatgacaat 374 ||||||||| Sbjct: 1626 gatgacaat 1618
>gb|AC074194.6| Homo sapiens BAC clone RP11-739P1 from 4, complete sequence Length = 177273 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Plus Query: 52 aaaataacatgaaaaaagaaacta 75 |||||||||||||||||||||||| Sbjct: 82872 aaaataacatgaaaaaagaaacta 82895
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 340 gcagcgataggcatgcctatgaaaccgatga 370 |||||||| ||||| |||||||||||||||| Sbjct: 5408146 gcagcgatcggcatccctatgaaaccgatga 5408116
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 340 gcagcgataggcatgcctatgaaaccgatga 370 |||||||| ||||| |||||||||||||||| Sbjct: 114314 gcagcgatcggcatccctatgaaaccgatga 114284
>gb|AC123568.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence Length = 145290 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 340 gcagcgataggcatgcctatgaaaccgatga 370 |||||||| ||||| |||||||||||||||| Sbjct: 4740 gcagcgatcggcatccctatgaaaccgatga 4710
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 340 gcagcgataggcatgcctatgaaaccgatga 370 |||||||| ||||| |||||||||||||||| Sbjct: 5407361 gcagcgatcggcatccctatgaaaccgatga 5407331
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 340 gcagcgataggcatgcctatgaaaccgatga 370 |||||||| ||||| |||||||||||||||| Sbjct: 137960 gcagcgatcggcatccctatgaaaccgatga 137930
>dbj|AK121250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101G05, full insert sequence Length = 3548 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 340 gcagcgataggcatgcctatgaaaccgatga 370 |||||||| ||||| |||||||||||||||| Sbjct: 3091 gcagcgatcggcatccctatgaaaccgatga 3061
>dbj|AK100415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M18, full insert sequence Length = 3726 Score = 46.1 bits (23), Expect = 0.081 Identities = 29/31 (93%) Strand = Plus / Minus Query: 340 gcagcgataggcatgcctatgaaaccgatga 370 |||||||| ||||| |||||||||||||||| Sbjct: 3409 gcagcgatcggcatccctatgaaaccgatga 3379
>gb|AC164984.2| Mus musculus BAC clone RP23-18I3 from chromosome 9, complete sequence Length = 214188 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 47 caaggaaaataacatgaaaaaa 68 |||||||||||||||||||||| Sbjct: 23675 caaggaaaataacatgaaaaaa 23654
>gb|AC156555.8| Mus musculus chromosome 7, clone RP23-59P20, complete sequence Length = 247652 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 aggaaaataacatgaaaaaaga 70 |||||||||||||||||||||| Sbjct: 80216 aggaaaataacatgaaaaaaga 80195
>gb|AF022969.1| Caenorhabditis elegans cosmid C29G2, complete sequence Length = 19194 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 gaaaataacatgaaaaaagaa 71 ||||||||||||||||||||| Sbjct: 3589 gaaaataacatgaaaaaagaa 3609 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aaaataacatgaaaaaagaa 71 |||||||||||||||||||| Sbjct: 5797 aaaataacatgaaaaaagaa 5816
>gb|AC159412.1| Trypanosoma brucei chromosome 7 clone RPCI93-21H15, complete sequence Length = 159636 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 aaatgcaaaagaaaaaagaag 160 ||||||||||||||||||||| Sbjct: 27855 aaatgcaaaagaaaaaagaag 27835
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 aaatgcaaaagaaaaaagaag 160 ||||||||||||||||||||| Sbjct: 2078743 aaatgcaaaagaaaaaagaag 2078763
>gb|AC116949.11| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence Length = 149132 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aaaagaaaaaagaaggccata 166 ||||||||||||||||||||| Sbjct: 79338 aaaagaaaaaagaaggccata 79358
>gb|AC159702.1| Trypanosoma brucei chromosome 7 clone RPCI93-30D13, complete sequence Length = 171752 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 aaatgcaaaagaaaaaagaag 160 ||||||||||||||||||||| Sbjct: 126486 aaatgcaaaagaaaaaagaag 126466
>gb|AE006228.1| Pasteurella multocida subsp. multocida str. Pm70 section 195 of 204 of the complete genome Length = 10684 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 aaggaaaataacatgaaaaaa 68 ||||||||||||||||||||| Sbjct: 8822 aaggaaaataacatgaaaaaa 8842
>gb|AY049008.1| Homo sapiens mitochondrial ceramidase gene, complete cds; nuclear gene for mitochondrial product Length = 61550 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 aacatgaaaaaagaaactaca 77 ||||||||||||||||||||| Sbjct: 27661 aacatgaaaaaagaaactaca 27681
>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete sequence Length = 209280 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 48 aaggaaaataacatgaaaaaagaaa 72 |||||||||||||| |||||||||| Sbjct: 16456 aaggaaaataacattaaaaaagaaa 16432
>gb|AY222076.1| Columnea latent viroid isolate CLVd(Path-CCR), complete genome Length = 363 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 atgcaaaagaaaaaagaaggc 162 ||||||||||||||||||||| Sbjct: 48 atgcaaaagaaaaaagaaggc 68
>emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chromosome 10 Contains a novel protein similar to KIAA0592, solute carrier family 9 member 3 (SLC9A3) pseudogene and novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), complete sequence Length = 163231 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 aacatgaaaaaagaaactaca 77 ||||||||||||||||||||| Sbjct: 142982 aacatgaaaaaagaaactaca 142962
>emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chromosome 10 Contains part of gene FLJ10824, a solute carrier family 9 (sodium/hydrogen exchanger) isoform 5 (SLC9A5) pseudogene, the ASAH2 gene for N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 and a dynein cytoplasmic intermediate polypeptide 2 (DNCI2) pseudogene, complete sequence Length = 162228 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 aacatgaaaaaagaaactaca 77 ||||||||||||||||||||| Sbjct: 96268 aacatgaaaaaagaaactaca 96248
>emb|AL445190.9| Human DNA sequence from clone RP11-349J5 on chromosome 6 Contains the 5' end of the ALDH8A1 gene for aldehyde dehydrogenase 8 family, member A1, a novel gene and the 3' end of the HBS1L gene for HBS1-like (S. cerevisiae) (KIAA1038, EFRS), complete sequence Length = 65249 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aatcaagcccacagtcttggc 123 ||||||||||||||||||||| Sbjct: 58616 aatcaagcccacagtcttggc 58636
>gb|L23646.2| Caenorhabditis elegans cosmid F44E2, complete sequence Length = 34151 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 caaacacttctgaagaatcaa 108 ||||||||||||||||||||| Sbjct: 10314 caaacacttctgaagaatcaa 10294
>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06, complete sequence Length = 174019 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aaaagaaaaaagaaggccata 166 ||||||||||||||||||||| Sbjct: 134506 aaaagaaaaaagaaggccata 134526
>ref|NM_066551.3| Caenorhabditis elegans F44E2.4 (F44E2.4) mRNA, complete cds Length = 4202 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 caaacacttctgaagaatcaa 108 ||||||||||||||||||||| Sbjct: 834 caaacacttctgaagaatcaa 854
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aaaagaaaaaagaaggccata 166 ||||||||||||||||||||| Sbjct: 2427241 aaaagaaaaaagaaggccata 2427261
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aaaagaaaaaagaaggccata 166 ||||||||||||||||||||| Sbjct: 15962982 aaaagaaaaaagaaggccata 15963002
>gb|AC159038.1| Pan troglodytes BAC clone CH251-156A12 from chromosome unknown, complete sequence Length = 183175 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 ctctaaagatcaaatgcaaaagaaa 153 |||||||||||||| |||||||||| Sbjct: 134127 ctctaaagatcaaaggcaaaagaaa 134103
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aaaagaaaaaagaaggccata 166 ||||||||||||||||||||| Sbjct: 15971223 aaaagaaaaaagaaggccata 15971243
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aaaagaaaaaagaaggccata 166 ||||||||||||||||||||| Sbjct: 2434977 aaaagaaaaaagaaggccata 2434997
>emb|CT025540.12| Mouse DNA sequence from clone RP24-280B23 on chromosome 12, complete sequence Length = 199060 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 48 aaggaaaataacatgaaaaaagaaa 72 |||||||||||||| |||||||||| Sbjct: 37815 aaggaaaataacattaaaaaagaaa 37839
>emb|AL732296.11| Mouse DNA sequence from clone RP23-131P6 on chromosome 2, complete sequence Length = 203503 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 caaatgcaaaagaaaaaagaa 159 ||||||||||||||||||||| Sbjct: 128458 caaatgcaaaagaaaaaagaa 128478
>emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chromosome X, complete sequence Length = 175639 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 ctctaaagatcaaatgcaaaa 149 ||||||||||||||||||||| Sbjct: 117985 ctctaaagatcaaatgcaaaa 117965
>gb|AC139369.9| Mus musculus chromosome 1, clone RP24-567B20, complete sequence Length = 159817 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tttcaagtttcaacactcca 48 |||||||||||||||||||| Sbjct: 73128 tttcaagtttcaacactcca 73147
>gb|AC150577.4| Bos taurus BAC CH240-268P24 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 167618 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaatgcaaaagaaaaaaga 158 |||||||||||||||||||| Sbjct: 100974 caaatgcaaaagaaaaaaga 100955
>gb|AC009395.7| Drosophila melanogaster clone BACR01D01, complete sequence Length = 189116 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaatgcaaaagaaaaaaga 158 |||||||||||||||||||| Sbjct: 109662 caaatgcaaaagaaaaaaga 109643
>gb|AE017336.2| Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence Length = 181677 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atgcaaaagaaaaaagaagg 161 |||||||||||||||||||| Sbjct: 87309 atgcaaaagaaaaaagaagg 87328
>gb|AC136518.3| Mus musculus BAC clone RP23-304K22 from chromosome 16, complete sequence Length = 206486 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 aaaataacatgaaaaaagaaacta 75 |||| ||||||||||||||||||| Sbjct: 57522 aaaaaaacatgaaaaaagaaacta 57499
>gb|AC133210.3| Mus musculus chromosome UNK clone RP23-27L12, complete sequence Length = 210702 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aaatgcaaaagaaaaaagaa 159 |||||||||||||||||||| Sbjct: 110773 aaatgcaaaagaaaaaagaa 110792
>gb|AF065404.1| Bacillus anthracis virulence plasmid PX01, complete sequence Length = 181654 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atgcaaaagaaaaaagaagg 161 |||||||||||||||||||| Sbjct: 87259 atgcaaaagaaaaaagaagg 87278
>gb|AC165338.3| Mus musculus BAC clone RP24-456K15 from chromosome 10, complete sequence Length = 165515 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aaatgcaaaagaaaaaagaa 159 |||||||||||||||||||| Sbjct: 8229 aaatgcaaaagaaaaaagaa 8248
>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence Length = 128458 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaatgcaaaagaaaaaaga 158 |||||||||||||||||||| Sbjct: 37960 caaatgcaaaagaaaaaaga 37941 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaatgcaaaagaaaaaaga 158 |||||||||||||||||||| Sbjct: 30518 caaatgcaaaagaaaaaaga 30499
>gb|AC127429.25| Medicago truncatula clone mth2-9o20, complete sequence Length = 130703 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 atcaaatgcaaaagaaaaaagaag 160 ||||||||||||| |||||||||| Sbjct: 99256 atcaaatgcaaaaaaaaaaagaag 99279
>gb|AC021032.9| Homo sapiens chromosome 10 clone RP11-180I22, complete sequence Length = 160635 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 aatagcagaaagaacagtttctta 213 ||||||||||||||||| |||||| Sbjct: 58734 aatagcagaaagaacagcttctta 58757
>emb|AL355881.15| Human DNA sequence from clone RP11-332B14 on chromosome 6 Contains part of the SGK gene for serum/glucocorticoid regulated kinase and a keratin 8 (KRT8) pseudogene, complete sequence Length = 42304 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aaaataacatgaaaaaagaa 71 |||||||||||||||||||| Sbjct: 6417 aaaataacatgaaaaaagaa 6398
>emb|Z68166.1|SPAC11D3 S.pombe chromosome I cosmid c11D3 Length = 39292 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agatcaaatgcaaaagaaaa 154 |||||||||||||||||||| Sbjct: 35713 agatcaaatgcaaaagaaaa 35732
>emb|AL603707.5| Mouse DNA sequence from clone RP23-422L16 on chromosome 11 Contains the 3' end of the Sat2 gene for spermidine/spermine N1-acetyl transferase 2, a ribosomal potein S15A (Rps15a) pseudogene, a ubiquitin-like 5 (Ubl5) pseudogene, the Fxr2h gene for autosomal homolog of fragile X mental retardation gene 2, the Sox15 gene for SRY-box containing gene 15, the Mpdu1 gene for mannose-P-dolichol utilization defect 1, the Cd68 gene for CD68 antigen, the Eif4a1 gene for eukaryotic translation initiation factor 4A1, the gene for sentrin/SUMO-specific protease Smt3ip1, the Tnfsf13 and Tnfsf12 genes for tumor necrosis factor (ligand) superfamily members 13 and 12, three novel genes, a ribosomal protein L13 (Rpl13) pseudogene, the Polr2a gene for polymerase (RNA) II (DNA directed) polypeptide A, the Amac1 gene for acyl-malonyl condensing enzyme, the gene for a novel BTB/POZ domain containing C2H2 type zinc finger protein, the Chrnb1 gene for nicotinic cholinergic receptor beta polypeptide 1 (muscle), the Fgf11 gene for fibroblast growth factor 11, a novel pseudogene, the gene for the ortholog of human and rat neuroligin 2 NLGN2, the gene for a novel protein of unknown function (DUF423) family member, the Plscr3 gene for phospholipid scramblase 3, the 3' end of the Tnk1 gene for non-receptor tyrosine kinase 1 and nine CpG islands, complete sequence Length = 234182 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aaatgcaaaagaaaaaagaa 159 |||||||||||||||||||| Sbjct: 209675 aaatgcaaaagaaaaaagaa 209656
>emb|BX936405.7| Zebrafish DNA sequence from clone CH211-155J8 in linkage group 3, complete sequence Length = 134507 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aaataacatgaaaaaagaaa 72 |||||||||||||||||||| Sbjct: 83763 aaataacatgaaaaaagaaa 83744
>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence Length = 150889 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aaatgcaaaagaaaaaagaa 159 |||||||||||||||||||| Sbjct: 33176 aaatgcaaaagaaaaaagaa 33195
>emb|BX537307.6| Zebrafish DNA sequence from clone CH211-227H20 in linkage group 10, complete sequence Length = 99161 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aaagatcaaatgcaaaagaa 152 |||||||||||||||||||| Sbjct: 50981 aaagatcaaatgcaaaagaa 50962
>gb|AE011190.1| Bacillus anthracis str. A2012 plasmid pXO1, complete sequence Length = 181677 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atgcaaaagaaaaaagaagg 161 |||||||||||||||||||| Sbjct: 87309 atgcaaaagaaaaaagaagg 87328
>ref|NM_001018212.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC11D3.17), partial mRNA Length = 1758 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agatcaaatgcaaaagaaaa 154 |||||||||||||||||||| Sbjct: 194 agatcaaatgcaaaagaaaa 213
>dbj|AK087222.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030036F16 product:unclassifiable, full insert sequence Length = 1580 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aaacggattaatagcagaaa 200 |||||||||||||||||||| Sbjct: 148 aaacggattaatagcagaaa 167
>dbj|AK086388.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930025A01 product:unclassifiable, full insert sequence Length = 3601 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aaacggattaatagcagaaa 200 |||||||||||||||||||| Sbjct: 3487 aaacggattaatagcagaaa 3506
>gb|AC027281.10| Homo sapiens chromosome 16 clone RP11-424M24, complete sequence Length = 221210 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aaaaaagaaactacaagggg 82 |||||||||||||||||||| Sbjct: 18972 aaaaaagaaactacaagggg 18991
>gb|AC007812.6|AC007812 Drosophila melanogaster, chromosome 3R, region 91C-91C, BAC clone BACR01F15, complete sequence Length = 186989 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaatgcaaaagaaaaaaga 158 |||||||||||||||||||| Sbjct: 19945 caaatgcaaaagaaaaaaga 19926
>dbj|AB019229.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC16 Length = 84294 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ataacatgaaaaaagaaact 74 |||||||||||||||||||| Sbjct: 36912 ataacatgaaaaaagaaact 36931
>emb|BX942844.18| Zebrafish DNA sequence from clone CH211-11M18 in linkage group 20, complete sequence Length = 101954 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 agatcaaatgcaaaagaaaaaaga 158 ||||||||| |||||||||||||| Sbjct: 72657 agatcaaatacaaaagaaaaaaga 72680
>gb|AC138285.8| Mus musculus chromosome 1, clone RP24-383G22, complete sequence Length = 216104 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tttcaagtttcaacactcca 48 |||||||||||||||||||| Sbjct: 185362 tttcaagtttcaacactcca 185381
>emb|Z75104.1|SCYOR196C S.cerevisiae chromosome XV reading frame ORF YOR196c Length = 1691 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 aaagatcaaatgcaaaagaaaaaa 156 |||||| ||||||||||||||||| Sbjct: 30 aaagataaaatgcaaaagaaaaaa 7
>emb|Z75103.1|SCYOR195W S.cerevisiae chromosome XV reading frame ORF YOR195w Length = 3049 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 aaagatcaaatgcaaaagaaaaaa 156 |||||| ||||||||||||||||| Sbjct: 2818 aaagataaaatgcaaaagaaaaaa 2795
>gb|AE003723.5| Drosophila melanogaster chromosome 3R, section 61 of 118 of the complete sequence Length = 255619 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaatgcaaaagaaaaaaga 158 |||||||||||||||||||| Sbjct: 32690 caaatgcaaaagaaaaaaga 32671
>gb|AC166113.3| Mus musculus BAC clone RP23-23E6 from chromosome 14, complete sequence Length = 252394 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aggaaaataacatgaaaaaa 68 |||||||||||||||||||| Sbjct: 35041 aggaaaataacatgaaaaaa 35060
>gb|L11999.1|YSCLIPOIC Saccharomyces cerevisiae (clone pg189/ST3) lipoic acid synthase (LIP) gene, 5' end cds Length = 2200 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 aaagatcaaatgcaaaagaaaaaa 156 |||||| ||||||||||||||||| Sbjct: 1757 aaagataaaatgcaaaagaaaaaa 1780
>gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, complete sequence Length = 218949 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 aaacggattaatagcagaaa 200 |||||||||||||||||||| Sbjct: 136529 aaacggattaatagcagaaa 136548
>gb|AC022294.15| Homo sapiens 3 BAC RP11-4B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153940 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tacaatttcaagtttcaaca 43 |||||||||||||||||||| Sbjct: 103968 tacaatttcaagtttcaaca 103949
>emb|AL645535.16| Mouse DNA sequence from clone RP23-145G23 on chromosome 11, complete sequence Length = 161363 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 caaggaaaataacatgaaaa 66 |||||||||||||||||||| Sbjct: 127849 caaggaaaataacatgaaaa 127830 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,834,508 Number of Sequences: 3902068 Number of extensions: 4834508 Number of successful extensions: 175048 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 174583 Number of HSP's gapped (non-prelim): 465 length of query: 374 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 352 effective length of database: 17,147,199,772 effective search space: 6035814319744 effective search space used: 6035814319744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
