>RPOC_LACLA (Q9CEN7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1207

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 56   FNSETPDQTCSHLFQLNLMNGPSNYVAHTIGKLHLEARGE 175
            F  +TP   C H + +NL  G +  V   +G +  ++ GE
Sbjct: 890  FTCKTPHGVCKHCYGINLATGDAVEVGEAVGTIAAQSIGE 929

>ACVS_CEPAC (P25464) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase|
            (EC 6.3.2.26)
            (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
            synthetase) (ACV synthetase) (ACVS)
          Length = 3712

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 104  NLMNGPSNYVAHTIGKLHLEARGELNDSYNSNQMQQVLIQDSLKTK 241
            N  NG +N  AH  G     A G ++DSY ++ +QQ  +  SLK +
Sbjct: 872  NGTNGVTNGTAHVNGHA---ANGHVSDSYVASSLQQGFVYHSLKNE 914

>LRC49_HUMAN (Q8IUZ0) Leucine-rich repeat-containing protein 49|
          Length = 685

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +2

Query: 32  SIEVAEQRFNSETPDQTCSHLFQLNLMNGPSNYVAHTIGKLHLEARGELNDSYNSNQMQQ 211
           S++V +   N  T  +  +HL +L ++N   N+++H      L++  ELN     NQ+  
Sbjct: 179 SLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELN--LRHNQITF 236

Query: 212 VLIQDSLKTK*YLYCS 259
           V   D+L    +L+ S
Sbjct: 237 VRDVDNLPCLQHLFLS 252

>TOP1_MYCGA (Q9JN65) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 719

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 125 NYVAHTIGKLHLEARGELNDSYNSNQMQQVLIQDS 229
           ++VA T GK ++  + +LN    +N+ Q+  +QD+
Sbjct: 352 DFVAKTYGKDYVATQSQLNGETKANKKQKAKVQDA 386

>PYP2_SCHPO (P32586) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)|
           (Protein-tyrosine phosphatase 2) (PTPase 2)
          Length = 711

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 35  IEVAEQRFNSETPDQTCSHLFQLNLMNGPSNYVAH 139
           + ++ Q++ +    +  +HLF+L+  NGP  Y+ H
Sbjct: 559 LRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHH 593

>GLN3_YEAST (P18494) Nitrogen regulatory protein GLN3|
          Length = 730

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
 Frame = +2

Query: 41  VAEQRFNSETPDQT--CSHLFQLNLMNGP-----------SNYVAHTIGKLHLEARGELN 181
           ++   FNS +P Q    S+ FQ   MN P           S+++A ++ +LH + + ++N
Sbjct: 543 ISSANFNSNSPLQQNLLSNSFQRQGMNIPRRKMSRNASYSSSFMAASLQQLHEQQQVDVN 602

Query: 182 DSYNSNQMQQ 211
            + N+N  +Q
Sbjct: 603 SNTNTNSNRQ 612

>C3G_DROME (O77086) Guanine nucleotide-releasing factor 2 (CRK SH3-binding|
           GNRP)
          Length = 1571

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 271 HHFFWDVFRVQASPQDSNQDNSTPSRIC 354
           HH  W   R   SP+D+N ++S  S  C
Sbjct: 68  HHRLWKTQRQSWSPRDTNNNHSLTSNNC 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,866,007
Number of Sequences: 219361
Number of extensions: 774929
Number of successful extensions: 1437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)