ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY483152.1| Hordeum vulgare putative cellulose synthase catal... 464 e-127
2ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.005
4emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in... 50 0.005
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
6gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 50 0.005
7dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
8dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
9ref|NM_001030622.1| Gallus gallus kinesin family member 3A (KIF3... 44 0.31
10ref|XM_414646.1| PREDICTED: Gallus gallus similar to Kinesin-lik... 44 0.31
11gb|AC155728.13| Mus musculus 6 BAC RP24-162H1 (Roswell Park Canc... 44 0.31
12gb|U40427.1| Caenorhabditis elegans cosmid F43C9, complete sequence 44 0.31
13emb|AJ851728.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.31
14emb|AJ621737.1| Gallus gallus partial KIF3A gene for kinesin-lik... 44 0.31
15emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 12... 44 0.31
16gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromoso... 44 0.31
17gb|AC002565.1|HUAC002565 Human Chromosome 16 BAC clone CIT987SK-... 42 1.2
18emb|Z81311.1|HSU244G10 Human DNA sequence from clone LL0XNC01-24... 42 1.2
19emb|AL365364.19| Human DNA sequence from clone RP11-624L12 on ch... 42 1.2
20emb|BX004828.21| Zebrafish DNA sequence from clone DKEY-185M8, c... 42 1.2
21gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, com... 42 1.2
22gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, compl... 42 1.2
23emb|AL928824.13| Zebrafish DNA sequence from clone CH211-105D18 ... 42 1.2
24emb|AL607066.23| Mouse DNA sequence from clone RP23-406N5 on chr... 42 1.2
25gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, co... 40 4.8
26gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Can... 40 4.8
27ref|NM_001003040.1| Canis familiaris retinitis pigmentosa 1 (aut... 40 4.8
28ref|NM_001006386.2| Gallus gallus lipin 2 (LPIN2), mRNA 40 4.8
29ref|NM_006836.1| Homo sapiens GCN1 general control of amino-acid... 40 4.8
30gb|AC100817.5| Homo sapiens chromosome 8, clone RP11-936G2, comp... 40 4.8
31emb|CR318600.13| Zebrafish DNA sequence from clone DKEY-37F13 in... 40 4.8
32emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 ... 40 4.8
33emb|BX901925.10| Zebrafish DNA sequence from clone DKEYP-86C11 i... 40 4.8
34gb|AC161506.4| Mus musculus chromosome 3, clone RP24-210J6, comp... 40 4.8
35emb|CR388386.12| Zebrafish DNA sequence from clone DKEY-253N6 in... 40 4.8
36gb|AY034786.1| Canis familiaris retinitis pigmentosa 1 protein (... 40 4.8
37gb|AC025881.6| Homo sapiens chromosome 8, clone RP11-393K19, com... 40 4.8
38gb|AC090200.4| Homo sapiens chromosome 8, clone RP11-628E19, com... 40 4.8
39emb|BX539341.8| Zebrafish DNA sequence from clone DKEY-3P4 in li... 40 4.8
40gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell P... 40 4.8
41gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complet... 40 4.8
42gb|AC073907.25| Homo sapiens 12 BAC RP11-202G24 (Roswell Park Ca... 40 4.8
43gb|AC005842.14| Homo sapiens 12 BAC RP11-303E5 (Roswell Park Can... 40 4.8
44emb|BX649585.4| Zebrafish DNA sequence from clone CH211-123B7 in... 40 4.8
45gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, co... 40 4.8
46emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on ch... 40 4.8
47emb|AL928573.14| Zebrafish DNA sequence from clone DKEY-11F5, co... 40 4.8
48gb|U20162.1|YSCL9931 Saccharomyces cerevisiae chromosome XII cos... 40 4.8
49gb|U50185.1|RNU50185 Rattus norvegicus kidney protein phosphatas... 40 4.8 
>gb|AY483152.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA2)
            mRNA, complete cds
          Length = 3907

 Score =  464 bits (234), Expect = e-127
 Identities = 273/285 (95%), Gaps = 7/285 (2%)
 Strand = Plus / Minus

                                                                        
Query: 80   aaatacaagttgtttcaagtttgtacatacataataatacatccttcgggcaatagcata 139
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 aaatacaagttgtttcgagtttgtacatacataataatacatccttcgggcaatagcata 3768

                                                                        
Query: 140  cagacgacgacagctctcagtttcggttcacttacatacatttttatcctctccatttaa 199
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3767 cagacgacgacagctctcagtttcggctcacttacatacatttttatcctctccatttaa 3708

                                                                        
Query: 200  atcaaggtcaacaaataaagaattgctggctggctggacaatgaaacaacactggaactg 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3707 atcaaggtcaacaaataaagaattgctggctggctggacaatgaaacaacactggaactg 3648

                                                                        
Query: 260  actcactgacttgctggccggctggctgtatttctttcttcttcttcggggccgaactgc 319
            |||||||||||||||    ||||||||||||||||   |||||||||| |||||||||||
Sbjct: 3647 actcactgacttgct----ggctggctgtatttct---ttcttcttcgtggccgaactgc 3595

                                                         
Query: 320  acagaggtgaaggggttgccgcagcctcccgcctgccaaaatatt 364
            ||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 3594 acagaggtgaaggggttgccgcagcctcccgtctgcccaaatatt 3550



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 50/51 (98%)
 Strand = Plus / Minus

                                                               
Query: 14   tagataaataatgtgcagcttcctctattacaaacggcattcttgccttac 64
            ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3891 tagataaataatgtgcagcttcctctattacaaaccgcattcttgccttac 3841
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>ref|XM_470347.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3905

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 12   gctagataaataatgtgcagcttcctctattacaaacggca 52
            |||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 3692 gctacataaataatgtgcatcttcctctattccagacggca 3652
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 12       gctagataaataatgtgcagcttcctctattacaaacggca 52
                |||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 34879215 gctacataaataatgtgcatcttcctctattccagacggca 34879175
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>emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in linkage group 13,
             complete sequence
          Length = 157140

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 230   tggctggacaatgaaacaacactgg 254
             |||||||||||||||||||||||||
Sbjct: 68862 tggctggacaatgaaacaacactgg 68886
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 12       gctagataaataatgtgcagcttcctctattacaaacggca 52
                |||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 34969287 gctacataaataatgtgcatcttcctctattccagacggca 34969247
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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
              sequence
          Length = 171376

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 12     gctagataaataatgtgcagcttcctctattacaaacggca 52
              |||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 136265 gctacataaataatgtgcatcttcctctattccagacggca 136305
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>dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full
            insert sequence
          Length = 4029

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 12   gctagataaataatgtgcagcttcctctattacaaacggca 52
            |||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 3862 gctacataaataatgtgcatcttcctctattccagacggca 3822
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>dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H07, full
            insert sequence
          Length = 1180

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 12   gctagataaataatgtgcagcttcctctattacaaacggca 52
            |||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 1009 gctacataaataatgtgcatcttcctctattccagacggca 969
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>ref|NM_001030622.1| Gallus gallus kinesin family member 3A (KIF3A), mRNA
          Length = 4163

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 281  ctggctgtatttctttcttcttcttc 306
            |||||| |||||||||||||||||||
Sbjct: 1421 ctggctttatttctttcttcttcttc 1396
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>ref|XM_414646.1| PREDICTED: Gallus gallus similar to Kinesin-like protein KIF3A
           (Microtubule plus end-directed kinesin motor 3A)
           (LOC416331), mRNA
          Length = 1218

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 281 ctggctgtatttctttcttcttcttc 306
           |||||| |||||||||||||||||||
Sbjct: 403 ctggctttatttctttcttcttcttc 378
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>gb|AC155728.13| Mus musculus 6 BAC RP24-162H1 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176377

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 285   ctgtatttctttcttcttcttc 306
             ||||||||||||||||||||||
Sbjct: 83827 ctgtatttctttcttcttcttc 83848
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>gb|U40427.1| Caenorhabditis elegans cosmid F43C9, complete sequence
          Length = 34037

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 100   ttgtacatacataataatacat 121
             ||||||||||||||||||||||
Sbjct: 13831 ttgtacatacataataatacat 13810
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>emb|AJ851728.1| Gallus gallus mRNA for hypothetical protein, clone 22e2
          Length = 4163

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 281  ctggctgtatttctttcttcttcttc 306
            |||||| |||||||||||||||||||
Sbjct: 1421 ctggctttatttctttcttcttcttc 1396
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>emb|AJ621737.1| Gallus gallus partial KIF3A gene for kinesin-like protein KIF3A,
            exons 10-12, BAC bW075D23 clone, contig 3
          Length = 1950

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 281  ctggctgtatttctttcttcttcttc 306
            |||||| |||||||||||||||||||
Sbjct: 1507 ctggctttatttctttcttcttcttc 1532
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>emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 129/Sv, complete sequence
          Length = 167508

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 285   ctgtatttctttcttcttcttc 306
             ||||||||||||||||||||||
Sbjct: 72367 ctgtatttctttcttcttcttc 72388
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>gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromosome unknown, complete
              sequence
          Length = 211288

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 281    ctggctgtatttctttcttcttcttc 306
              |||||| |||||||||||||||||||
Sbjct: 107749 ctggctttatttctttcttcttcttc 107724
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>gb|AC002565.1|HUAC002565 Human Chromosome 16 BAC clone CIT987SK-A-598D4, complete sequence
          Length = 103911

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 16  gataaataatgtgcagcttcc 36
           |||||||||||||||||||||
Sbjct: 487 gataaataatgtgcagcttcc 467
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>emb|Z81311.1|HSU244G10 Human DNA sequence from clone LL0XNC01-244G10 on chromosome Xq26-27.1
             Contains a melanoma antigen, family A, 11 (MAGEA11)
             pseudogene and a tau tubulin kinase pseudogene, complete
             sequence
          Length = 43927

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 286   tgtatttctttcttcttcttc 306
             |||||||||||||||||||||
Sbjct: 12128 tgtatttctttcttcttcttc 12148
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>emb|AL365364.19| Human DNA sequence from clone RP11-624L12 on chromosome 10 Contains a
              ribosomal protein L17 (RPL17) pseudogene and the 3'end of
              the FER1L3 gene for fer-1-like 3, myoferlin (C. elegans),
              complete sequence
          Length = 173864

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    tgtatttctttcttcttcttc 306
              |||||||||||||||||||||
Sbjct: 153643 tgtatttctttcttcttcttc 153663
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>emb|BX004828.21| Zebrafish DNA sequence from clone DKEY-185M8, complete sequence
          Length = 161870

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    tgtatttctttcttcttcttc 306
              |||||||||||||||||||||
Sbjct: 117680 tgtatttctttcttcttcttc 117700
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>gb|AC008731.8| Homo sapiens chromosome 16 clone CTD-2515A14, complete sequence
          Length = 219013

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     gataaataatgtgcagcttcc 36
              |||||||||||||||||||||
Sbjct: 188859 gataaataatgtgcagcttcc 188839
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>gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, complete sequence
          Length = 112755

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 316   ctgcacagaggtgaaggggtt 336
             |||||||||||||||||||||
Sbjct: 72266 ctgcacagaggtgaaggggtt 72286
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>emb|AL928824.13| Zebrafish DNA sequence from clone CH211-105D18 in linkage group 6,
             complete sequence
          Length = 189742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   tgtatttctttcttcttcttc 306
             |||||||||||||||||||||
Sbjct: 18694 tgtatttctttcttcttcttc 18674
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>emb|AL607066.23| Mouse DNA sequence from clone RP23-406N5 on chromosome 4, complete
             sequence
          Length = 194837

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 279   ggctggctgtatttctttctt 299
             |||||||||||||||||||||
Sbjct: 87547 ggctggctgtatttctttctt 87567
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>gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, complete sequence
          Length = 171669

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    tttgtacatacataataata 118
             ||||||||||||||||||||
Sbjct: 66014 tttgtacatacataataata 66033
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>gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 211343

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 283   ggctgtatttctttcttcttcttc 306
             |||| |||||||||||||||||||
Sbjct: 35518 ggctttatttctttcttcttcttc 35541
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>ref|NM_001003040.1| Canis familiaris retinitis pigmentosa 1 (autosomal dominant) (RP1),
            mRNA
          Length = 6426

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  atttctttcttcttcttcgg 308
            ||||||||||||||||||||
Sbjct: 4557 atttctttcttcttcttcgg 4538
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>ref|NM_001006386.2| Gallus gallus lipin 2 (LPIN2), mRNA
          Length = 2812

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 286 tgtatttctttcttcttctt 305
           ||||||||||||||||||||
Sbjct: 599 tgtatttctttcttcttctt 580
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>ref|NM_006836.1| Homo sapiens GCN1 general control of amino-acid synthesis 1-like 1
            (yeast) (GCN1L1), mRNA
          Length = 8699

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  tgaaggggttgccgcagcct 346
            ||||||||||||||||||||
Sbjct: 1474 tgaaggggttgccgcagcct 1493
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>gb|AC100817.5| Homo sapiens chromosome 8, clone RP11-936G2, complete sequence
          Length = 152388

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 251  ctggaactgactcactgacttgctggcc 278
            ||||| |||| |||||||||||||||||
Sbjct: 9481 ctggagctgattcactgacttgctggcc 9508
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>emb|CR318600.13| Zebrafish DNA sequence from clone DKEY-37F13 in linkage group 7,
           complete sequence
          Length = 257374

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 acatacatttttatcctctc 192
           ||||||||||||||||||||
Sbjct: 118 acatacatttttatcctctc 99
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>emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 in linkage group 16,
             complete sequence
          Length = 179375

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   tgtatttctttcttcttctt 305
             ||||||||||||||||||||
Sbjct: 65060 tgtatttctttcttcttctt 65079
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>emb|BX901925.10| Zebrafish DNA sequence from clone DKEYP-86C11 in linkage group 17,
             complete sequence
          Length = 187245

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 256   actgactcactgacttgctggccggctg 283
             ||||||||| ||||| ||||||||||||
Sbjct: 22664 actgactcaatgactggctggccggctg 22637
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>gb|AC161506.4| Mus musculus chromosome 3, clone RP24-210J6, complete sequence
          Length = 175241

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   tttgtacatacataataata 118
            ||||||||||||||||||||
Sbjct: 7500 tttgtacatacataataata 7481
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>emb|CR388386.12| Zebrafish DNA sequence from clone DKEY-253N6 in linkage group 22,
              complete sequence
          Length = 143089

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     acaagttgtttcaagtttgt 103
              ||||||||||||||||||||
Sbjct: 128219 acaagttgtttcaagtttgt 128200
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>gb|AY034786.1| Canis familiaris retinitis pigmentosa 1 protein (RP1) mRNA, complete
            cds
          Length = 6426

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  atttctttcttcttcttcgg 308
            ||||||||||||||||||||
Sbjct: 4557 atttctttcttcttcttcgg 4538
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>gb|AC025881.6| Homo sapiens chromosome 8, clone RP11-393K19, complete sequence
          Length = 176048

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     aagttgtttcaagtttgtacatac 109
              ||||| ||||||||||||||||||
Sbjct: 103466 aagttctttcaagtttgtacatac 103489
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>gb|AC090200.4| Homo sapiens chromosome 8, clone RP11-628E19, complete sequence
          Length = 149955

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 251   ctggaactgactcactgacttgctggcc 278
             ||||| |||| |||||||||||||||||
Sbjct: 17001 ctggagctgattcactgacttgctggcc 16974
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>emb|BX539341.8| Zebrafish DNA sequence from clone DKEY-3P4 in linkage group 22, complete
              sequence
          Length = 236484

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    tgtatttctttcttcttctt 305
              ||||||||||||||||||||
Sbjct: 188518 tgtatttctttcttcttctt 188537
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>gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167041

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    gtatttctttcttcttcttc 306
              ||||||||||||||||||||
Sbjct: 156224 gtatttctttcttcttcttc 156243
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>gb|AC110296.3| Homo sapiens BAC clone RP11-120A1 from 4, complete sequence
          Length = 132626

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   tgtatttctttcttcttctt 305
             ||||||||||||||||||||
Sbjct: 80203 tgtatttctttcttcttctt 80222
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>gb|AC073907.25| Homo sapiens 12 BAC RP11-202G24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 135245

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   gtatttctttcttcttcttc 306
             ||||||||||||||||||||
Sbjct: 78811 gtatttctttcttcttcttc 78792
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>gb|AC005842.14| Homo sapiens 12 BAC RP11-303E5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 54501

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   cggctggctgtatttctttc 297
             ||||||||||||||||||||
Sbjct: 32194 cggctggctgtatttctttc 32213
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>emb|BX649585.4| Zebrafish DNA sequence from clone CH211-123B7 in linkage group 22,
             complete sequence
          Length = 153749

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    acaagttgtttcaagtttgt 103
             ||||||||||||||||||||
Sbjct: 18578 acaagttgtttcaagtttgt 18597
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>gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, complete sequence
          Length = 138532

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    tgaaggggttgccgcagcct 346
              ||||||||||||||||||||
Sbjct: 116279 tgaaggggttgccgcagcct 116260
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>emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on chromosome 4, complete
              sequence
          Length = 223059

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    gctggctggctggacaatga 243
              ||||||||||||||||||||
Sbjct: 152991 gctggctggctggacaatga 152972
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>emb|AL928573.14| Zebrafish DNA sequence from clone DKEY-11F5, complete sequence
          Length = 244471

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   tgtatttctttcttcttctt 305
             ||||||||||||||||||||
Sbjct: 69149 tgtatttctttcttcttctt 69130
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>gb|U20162.1|YSCL9931 Saccharomyces cerevisiae chromosome XII cosmid 9931
          Length = 28149

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 200   atcaaggtcaacaaataaagaatt 223
             ||||||||||||||||| ||||||
Sbjct: 22442 atcaaggtcaacaaatatagaatt 22419
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>gb|U50185.1|RNU50185 Rattus norvegicus kidney protein phosphatase 1 myosin binding subunit
            mRNA, partial cds
          Length = 1975

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  tttctttcttcttcttcggg 309
            ||||||||||||||||||||
Sbjct: 1256 tttctttcttcttcttcggg 1237


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,371,540
Number of Sequences: 3902068
Number of extensions: 5371540
Number of successful extensions: 115646
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115484
Number of HSP's gapped (non-prelim): 159
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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