ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470770.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.26
2gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.26
4gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 geno... 44 0.26
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
7dbj|AK102079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
8dbj|AK058345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
9gb|AC110904.8| Mus musculus chromosome 7, clone RP24-174I24, com... 42 1.0
10gb|AC157574.6| Mus musculus BAC clone RP23-1G17 from chromosome ... 42 1.0
11gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's H... 42 1.0
12emb|CT025709.6| Mouse DNA sequence from clone RP23-364G1 on chro... 42 1.0
13gb|AC124372.4| Mus musculus BAC clone RP24-556P17 from chromosom... 42 1.0
14gb|AC126455.4| Mus musculus BAC clone RP23-260P2 from chromosome... 42 1.0
15gb|AC121899.3| Mus musculus BAC clone RP24-166J12 from chromosom... 42 1.0
16gb|AC124523.5| Mus musculus BAC clone RP23-399P19 from chromosom... 42 1.0
17gb|AC149065.4| Mus musculus BAC clone RP23-121I6 from chromosome... 42 1.0
18gb|AC158572.3| Mus musculus chromosome 7, clone RP24-402J3, comp... 42 1.0
19emb|AL669896.7| Mouse DNA sequence from clone RP23-477F4 on chro... 42 1.0
20gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, comp... 42 1.0
21gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosom... 42 1.0
22gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome... 42 1.0
23gb|AC154359.2| Mus musculus BAC clone RP23-178L8 from chromosome... 42 1.0
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
25dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
26emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, co... 42 1.0
27dbj|AK059658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
28gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.... 42 1.0
29gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complet... 42 1.0
30emb|AL583883.12| Mouse DNA sequence from clone RP23-400F7 on chr... 42 1.0
31ref|XM_483202.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.1
32ref|NM_190850.1| Oryza sativa (japonica cultivar-group), predic... 40 4.1
33gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome... 40 4.1
34gb|AC168270.1| Mus musculus BAC clone RP23-173C15 from chromosom... 40 4.1
35gb|AF127019.7| Homo sapiens chromosome 8 clone GS1-188e4 map p23... 40 4.1
36gb|AC133201.2| Mus musculus BAC clone RP23-74A8 from chromosome ... 40 4.1
37emb|AL133283.9| Human DNA sequence from clone RP11-31M2 on chrom... 40 4.1
38emb|AL031534.1|SPBC4F6 S.pombe chromosome II cosmid c4F6 40 4.1
39dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 4.1
40gb|AC113147.3| Homo sapiens chromosome 8, clone RP11-357H1, comp... 40 4.1
41gb|AC023306.8| Homo sapiens chromosome 8, clone RP11-199C5, comp... 40 4.1
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
44dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
45gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence 40 4.1
46dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
47dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
48gb|AC147720.1| Gallus gallus BAC clone CH261-46I14 from chromoso... 40 4.1
49gb|AC118596.7| Mus musculus chromosome 1, clone RP24-199M24, com... 40 4.1
50emb|AL671321.16| Mouse DNA sequence from clone RP23-274I19 on ch... 40 4.1
51gb|AC166749.6| Mus musculus chromosome 1, clone RP23-463A15, com... 40 4.1
52emb|AL833787.8| Mouse DNA sequence from clone RP23-228E2 on chro... 40 4.1 
>ref|XM_470770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 606

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 282 gaggcgacggggccagcgccggcgagggcg 311
           |||||| ||||| |||||||||||||||||
Sbjct: 105 gaggcggcggggtcagcgccggcgagggcg 134
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>gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1354_D07,
            complete sequence
          Length = 156163

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 277  agggcgaggcgacggggccagc 298
            ||||||||||||||||||||||
Sbjct: 1336 agggcgaggcgacggggccagc 1357
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 282      gaggcgacggggccagcgccggcgagggcg 311
                |||||| ||||| |||||||||||||||||
Sbjct: 14985464 gaggcggcggggtcagcgccggcgagggcg 14985435
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>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete
             sequence
          Length = 137184

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 282   gaggcgacggggccagcgccggcgagggcg 311
             |||||| ||||| |||||||||||||||||
Sbjct: 57298 gaggcggcggggtcagcgccggcgagggcg 57327
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 277      agggcgaggcgacggggccagc 298
                ||||||||||||||||||||||
Sbjct: 18361499 agggcgaggcgacggggccagc 18361520
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 282      gaggcgacggggccagcgccggcgagggcg 311
                |||||| ||||| |||||||||||||||||
Sbjct: 14979998 gaggcggcggggtcagcgccggcgagggcg 14979969
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>dbj|AK102079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082J04, full
           insert sequence
          Length = 796

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 277 agggcgaggcgacggggccagc 298
           ||||||||||||||||||||||
Sbjct: 66  agggcgaggcgacggggccagc 45
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>dbj|AK058345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D12, full
           insert sequence
          Length = 919

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 277 agggcgaggcgacggggccagc 298
           ||||||||||||||||||||||
Sbjct: 140 agggcgaggcgacggggccagc 119
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>gb|AC110904.8| Mus musculus chromosome 7, clone RP24-174I24, complete sequence
          Length = 150036

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 217   tacaagaaacagaggctcagg 237
             |||||||||||||||||||||
Sbjct: 71642 tacaagaaacagaggctcagg 71662
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>gb|AC157574.6| Mus musculus BAC clone RP23-1G17 from chromosome 8, complete sequence
          Length = 216443

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 218    acaagaaacagaggctcaggtaaac 242
              |||||||||||||||||||| ||||
Sbjct: 143593 acaagaaacagaggctcagggaaac 143617
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>gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237374

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    gcacaaaacaaagaatgttaa 201
              |||||||||||||||||||||
Sbjct: 147965 gcacaaaacaaagaatgttaa 147945
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>emb|CT025709.6| Mouse DNA sequence from clone RP23-364G1 on chromosome 17, complete
              sequence
          Length = 162359

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    gcacaaaacaaagaatgttaa 201
              |||||||||||||||||||||
Sbjct: 111236 gcacaaaacaaagaatgttaa 111216
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>gb|AC124372.4| Mus musculus BAC clone RP24-556P17 from chromosome 16, complete
             sequence
          Length = 197211

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    caaacaagccctatctatgta 93
             |||||||||||||||||||||
Sbjct: 57482 caaacaagccctatctatgta 57462
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>gb|AC126455.4| Mus musculus BAC clone RP23-260P2 from chromosome 16, complete
            sequence
          Length = 197474

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 73   caaacaagccctatctatgta 93
            |||||||||||||||||||||
Sbjct: 1844 caaacaagccctatctatgta 1864
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>gb|AC121899.3| Mus musculus BAC clone RP24-166J12 from chromosome 6, complete
            sequence
          Length = 129975

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  gcacaaaacaaagaatgttaa 201
            |||||||||||||||||||||
Sbjct: 5079 gcacaaaacaaagaatgttaa 5059
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>gb|AC124523.5| Mus musculus BAC clone RP23-399P19 from chromosome 6, complete sequence
          Length = 188084

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   gcacaaaacaaagaatgttaa 201
             |||||||||||||||||||||
Sbjct: 86038 gcacaaaacaaagaatgttaa 86018



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   gcacaaaacaaagaatgttaa 201
             |||||||||||||||||||||
Sbjct: 57480 gcacaaaacaaagaatgttaa 57460
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>gb|AC149065.4| Mus musculus BAC clone RP23-121I6 from chromosome 7, complete sequence
          Length = 208092

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    gcacaaaacaaagaatgttaa 201
              |||||||||||||||||||||
Sbjct: 192503 gcacaaaacaaagaatgttaa 192523
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>gb|AC158572.3| Mus musculus chromosome 7, clone RP24-402J3, complete sequence
          Length = 171722

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 217  tacaagaaacagaggctcagg 237
            |||||||||||||||||||||
Sbjct: 2237 tacaagaaacagaggctcagg 2257
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>emb|AL669896.7| Mouse DNA sequence from clone RP23-477F4 on chromosome 2, complete
              sequence
          Length = 163577

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    gcacaaaacaaagaatgttaa 201
              |||||||||||||||||||||
Sbjct: 160342 gcacaaaacaaagaatgttaa 160362
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>gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, complete sequence
          Length = 160348

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    tagaagcatatatagaaatta 121
              |||||||||||||||||||||
Sbjct: 150549 tagaagcatatatagaaatta 150569
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>gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosome 8, complete sequence
          Length = 170167

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   gcacaaaacaaagaatgttaa 201
             |||||||||||||||||||||
Sbjct: 78618 gcacaaaacaaagaatgttaa 78638
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>gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome 7, complete sequence
          Length = 256298

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    gcacaaaacaaagaatgttaa 201
              |||||||||||||||||||||
Sbjct: 126424 gcacaaaacaaagaatgttaa 126404
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>gb|AC154359.2| Mus musculus BAC clone RP23-178L8 from chromosome 16, complete sequence
          Length = 212696

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     caaacaagccctatctatgta 93
              |||||||||||||||||||||
Sbjct: 158059 caaacaagccctatctatgta 158079
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 191      aagaatgttaactgcacacta 211
                |||||||||||||||||||||
Sbjct: 14361749 aagaatgttaactgcacacta 14361729
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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0465E03
          Length = 151206

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   aagaatgttaactgcacacta 211
             |||||||||||||||||||||
Sbjct: 53552 aagaatgttaactgcacacta 53532
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>emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, complete sequence
          Length = 283185

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 195   atgttaactgcacactaatacatac 219
             ||||| |||||||||||||||||||
Sbjct: 75728 atgtttactgcacactaatacatac 75704
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>dbj|AK059658.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D06, full
            insert sequence
          Length = 1686

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 191  aagaatgttaactgcacacta 211
            |||||||||||||||||||||
Sbjct: 1528 aagaatgttaactgcacacta 1508
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>gb|AF207953.5| Homo sapiens chromosome 8 clone CTA-389B map q21.13, complete
            sequence
          Length = 112288

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 101  tagaagcatatatagaaatta 121
            |||||||||||||||||||||
Sbjct: 4780 tagaagcatatatagaaatta 4800
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>gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complete sequence
          Length = 157089

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   gcacaaaacaaagaatgttaa 201
             |||||||||||||||||||||
Sbjct: 25129 gcacaaaacaaagaatgttaa 25149
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>emb|AL583883.12| Mouse DNA sequence from clone RP23-400F7 on chromosome 15, complete
              sequence
          Length = 209857

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    acaagaaacagaggctcaggtaaac 242
              |||||||||||||||||||| ||||
Sbjct: 132781 acaagaaacagaggctcagggaaac 132757
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>ref|XM_483202.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 345

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 287 gacggggccagcgccggcga 306
           ||||||||||||||||||||
Sbjct: 108 gacggggccagcgccggcga 89
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>ref|NM_190850.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 627

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 286 cgacggggccagcgccggcg 305
           ||||||||||||||||||||
Sbjct: 456 cgacggggccagcgccggcg 437
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>gb|AC161416.2| Mus musculus BAC clone RP23-306A2 from chromosome 1, complete sequence
          Length = 196764

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 206   acactaatacatacaagaaacaga 229
             |||||||||||||| |||||||||
Sbjct: 66907 acactaatacatactagaaacaga 66930
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>gb|AC168270.1| Mus musculus BAC clone RP23-173C15 from chromosome 3, complete
           sequence
          Length = 216449

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 tatatagaaattaatcacaa 128
           ||||||||||||||||||||
Sbjct: 109 tatatagaaattaatcacaa 128
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>gb|AF127019.7| Homo sapiens chromosome 8 clone GS1-188e4 map p23.2, complete sequence
          Length = 182548

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   caagaaacagaggctcaggt 238
             ||||||||||||||||||||
Sbjct: 44904 caagaaacagaggctcaggt 44923
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>gb|AC133201.2| Mus musculus BAC clone RP23-74A8 from chromosome 3, complete sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    tatatagaaattaatcacaa 128
              ||||||||||||||||||||
Sbjct: 153285 tatatagaaattaatcacaa 153304
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>emb|AL133283.9| Human DNA sequence from clone RP11-31M2 on chromosome 9p23-24.3 Contains
              the 5' end of the gene for a novel GLI Kruppel family
              member zinc finger protein (FLJ90578) and two CpG islands,
              complete sequence
          Length = 158602

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    aaattaatcacaacaaaatgttat 139
              |||||||||||||||||| |||||
Sbjct: 127142 aaattaatcacaacaaaacgttat 127119
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>emb|AL031534.1|SPBC4F6 S.pombe chromosome II cosmid c4F6
          Length = 44778

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    aaaatatattgcatatgccg 40
             ||||||||||||||||||||
Sbjct: 37560 aaaatatattgcatatgccg 37541
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     ttaatcacaacaaaatgtta 138
               ||||||||||||||||||||
Sbjct: 1845855 ttaatcacaacaaaatgtta 1845874
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>gb|AC113147.3| Homo sapiens chromosome 8, clone RP11-357H1, complete sequence
          Length = 194518

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   caagaaacagaggctcaggt 238
             ||||||||||||||||||||
Sbjct: 84426 caagaaacagaggctcaggt 84407
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>gb|AC023306.8| Homo sapiens chromosome 8, clone RP11-199C5, complete sequence
          Length = 153197

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    caagaaacagaggctcaggt 238
              ||||||||||||||||||||
Sbjct: 151489 caagaaacagaggctcaggt 151470
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 287      gacggggccagcgccggcga 306
                ||||||||||||||||||||
Sbjct: 24779394 gacggggccagcgccggcga 24779375
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 286      cgacggggccagcgccggcg 305
                ||||||||||||||||||||
Sbjct: 33463079 cgacggggccagcgccggcg 33463060
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>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0557A01
          Length = 147201

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  cgacggggccagcgccggcg 305
            ||||||||||||||||||||
Sbjct: 8276 cgacggggccagcgccggcg 8257
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>gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence
          Length = 168307

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   gcacaaaacaaagaatgtta 200
             ||||||||||||||||||||
Sbjct: 96081 gcacaaaacaaagaatgtta 96062
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>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   gacggggccagcgccggcga 306
             ||||||||||||||||||||
Sbjct: 80195 gacggggccagcgccggcga 80176
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>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0415A04
          Length = 160669

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    cgacggggccagcgccggcg 305
              ||||||||||||||||||||
Sbjct: 139245 cgacggggccagcgccggcg 139226
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>gb|AC147720.1| Gallus gallus BAC clone CH261-46I14 from chromosome unknown, complete
             sequence
          Length = 204711

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   ctgcacactaatacatacaa 221
             ||||||||||||||||||||
Sbjct: 71111 ctgcacactaatacatacaa 71092
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>gb|AC118596.7| Mus musculus chromosome 1, clone RP24-199M24, complete sequence
          Length = 149611

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    gaaaatatattgcatatgcc 39
             ||||||||||||||||||||
Sbjct: 18665 gaaaatatattgcatatgcc 18646
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>emb|AL671321.16| Mouse DNA sequence from clone RP23-274I19 on chromosome X, complete
              sequence
          Length = 234316

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    cacaaaacaaagaatgttaa 201
              ||||||||||||||||||||
Sbjct: 212046 cacaaaacaaagaatgttaa 212065
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>gb|AC166749.6| Mus musculus chromosome 1, clone RP23-463A15, complete sequence
          Length = 186262

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    gcacaaaacaaagaatgtta 200
              ||||||||||||||||||||
Sbjct: 148310 gcacaaaacaaagaatgtta 148291
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>emb|AL833787.8| Mouse DNA sequence from clone RP23-228E2 on chromosome 2, complete
             sequence
          Length = 237055

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   aagaaacagaggctcaggta 239
             ||||||||||||||||||||
Sbjct: 11352 aagaaacagaggctcaggta 11371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,349,713
Number of Sequences: 3902068
Number of extensions: 3349713
Number of successful extensions: 75214
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74963
Number of HSP's gapped (non-prelim): 251
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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