ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 262 bits (132), Expect = 6e-67 Identities = 148/153 (96%), Gaps = 4/153 (2%) Strand = Plus / Minus Query: 24 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 84 agctgagctgagcttccgcatgccgatcagacccgtcgggcacgcaccc----ttattgc 139 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 140 cttaattattcatgcaccggcacaactctctgt 172 ||||||||||||||||||||||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744 Score = 186 bits (94), Expect = 3e-44 Identities = 106/110 (96%) Strand = Plus / Minus Query: 189 agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 248 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668 Query: 249 gtgctcaaatcaaatggatatgctgttcgggatgcccctggcggtgagcc 298 ||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcc 2618
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 17 catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 66 ||||||||| ||||||||||||| |||||| |||||||| ||||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| |||||||||||||| ||||||| Sbjct: 902 atggagatgctgttggggatgcccctggccgtgagcc 866 Score = 44.1 bits (22), Expect = 0.25 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 99 ccgcatgccgatcagacccgtcgggcacgcac-ccttattgcctta 143 ||||||||||||| ||||||||| |||| ||| | ||||||||||| Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 2442 atggagatgctgttggggatgcccatggcggtgagcc 2406
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 2921 atggagatgctgttggggatgcccatggcggtgagcc 2885
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 65812 atggagatgctgttggggatgcccatggcggtgagcc 65776
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 27821682 atggagatgctgttggggatgcccatggcggtgagcc 27821646 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 atcaaatggatatgctgttcgggatgcccctggcgg 292 |||| ||||| |||||||| |||||||||||||||| Sbjct: 30026450 atcagatggagatgctgttggggatgcccctggcgg 30026415
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 2915 atggagatgctgttggggatgcccatggcggtgagcc 2879
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 27913006 atggagatgctgttggggatgcccatggcggtgagcc 27912970 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 atcaaatggatatgctgttcgggatgcccctggcgg 292 |||| ||||| |||||||| |||||||||||||||| Sbjct: 30117872 atcagatggagatgctgttggggatgcccctggcgg 30117837
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 1328 atggagatgctgttggggatgcccatggcggtgagcc 1292
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 2593 atggagatgctgttggggatgcccatggcggtgagcc 2557
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 2923 atggagatgctgttggggatgcccatggcggtgagcc 2887
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 50.1 bits (25), Expect = 0.004 Identities = 34/37 (91%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcggtgagcc 298 ||||| |||||||| ||||||||| |||||||||||| Sbjct: 1493 atggagatgctgttggggatgcccatggcggtgagcc 1457
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 atcaaatggatatgctgttcgggatgcccctggcgg 292 |||| ||||| |||||||| |||||||||||||||| Sbjct: 2696 atcagatggagatgctgttggggatgcccctggcgg 2661
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Plus Query: 257 atcaaatggatatgctgttcgggatgcccctggcgg 292 |||| ||||| |||||||| |||||||||||||||| Sbjct: 81301 atcagatggagatgctgttggggatgcccctggcgg 81336
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 48.1 bits (24), Expect = 0.016 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 atcaaatggatatgctgttcgggatgcccctggcgg 292 |||| ||||| |||||||| |||||||||||||||| Sbjct: 2729 atcagatggagatgctgttggggatgcccctggcgg 2694
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 46.1 bits (23), Expect = 0.063 Identities = 29/31 (93%) Strand = Plus / Minus Query: 262 atggatatgctgttcgggatgcccctggcgg 292 ||||| |||||||| |||||||||||||||| Sbjct: 2609 atggagatgctgttggggatgcccctggcgg 2579
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattcatg 153 ||||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattcatg 153 ||||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattcatg 153 ||||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 131 ccttattgccttaattattcatg 153 ||||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aaacaagggattttttctgca 58 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Minus Query: 256 aatcaaatggatatgctgttcgggatgcc 284 ||||||||||| |||||||| |||||||| Sbjct: 2776 aatcaaatggagatgctgttggggatgcc 2748
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 gcaaaacaagggattttttct 55 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 gctgttcgggatgcccctggcggtgagcc 298 |||||| ||||||||| |||||||||||| Sbjct: 2752 gctgttggggatgcccatggcggtgagcc 2724
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggagggaacatcacaccatc 20 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,868,092 Number of Sequences: 3902068 Number of extensions: 1868092 Number of successful extensions: 36091 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36004 Number of HSP's gapped (non-prelim): 86 length of query: 298 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 276 effective length of database: 17,147,199,772 effective search space: 4732627137072 effective search space used: 4732627137072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
