ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56c08 |
|---|---|
| Clone Library Name | barley_pub |
>FAF1_HUMAN (Q9UNN5) FAS-associated factor 1 (Protein FAF1) (hFAF1)| Length = 650 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Frame = +3 Query: 81 PKGPSSATDQTSSGRNQKYLIPTRHH---RHHLINVARSKSLRPIKRDELDMILLSSCCI 251 P SS NQ +++ H R + +N + S +++ +KR+ D+ + Sbjct: 176 PPSSSSHAGALQESLNQNFMLIITHREVQREYNLNFSGSSTIQEVKRNVYDLTSIPVRHQ 235 Query: 252 RWEEWTTS 275 WE W TS Sbjct: 236 LWEGWPTS 243
>VGLM_BUNYW (P04505) M polyprotein precursor [Contains: Glycoprotein G2;| Nonstructural protein NS-M; Glycoprotein G1] Length = 1433 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 405 KEPVAPKTNCEGASRLVVGFRTRQTHAPFKSHVGCIMFLY 286 K V CE ++ G +T Q HA FK H+ C+ FL+ Sbjct: 150 KASVTLDRTCEHI-KVSCGKKTLQFHACFKQHMSCVRFLH 188
>VGLM_BUNGE (P12430) M polyprotein precursor [Contains: Glycoprotein G2;| Nonstructural protein NS-M; Glycoprotein G1] Length = 1437 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 405 KEPVAPKTNCEGASRLVVGFRTRQTHAPFKSHVGCIMFLY 286 K V+ CE ++ G ++ Q HA FK H+ C+ FL+ Sbjct: 154 KTSVSLDNTCEHI-KVTCGKKSLQFHACFKQHMSCVRFLH 192
>YG51_YEAST (P50089) Hypothetical 89.2 kDa protein in YHB1-PFK1 intergenic| region Length = 785 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +3 Query: 66 LRTQTPKGPSSATDQTSSGRNQKYLIPTRHHRHHLINVARSKSLRPIK 209 +R G S T TSS Q+ HH HH +V+R+K+ K Sbjct: 703 MRKTKSAGLSPRTSSTSSSSGQR---KAHHHHHHHNHVSRTKTTESTK 747
>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3511 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 402 EPVAPKTNCEGASRLVVGFRTR 337 EP PK + +G SRL +GFR R Sbjct: 19 EPEKPKRSLKGTSRLFMGFRDR 40
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 402 EPVAPKTNCEGASRLVVGFRTR 337 EP PK + +G SRL +GFR R Sbjct: 22 EPEKPKRSLKGTSRLFMGFRDR 43
>FAF1_RAT (Q924K2) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = +3 Query: 81 PKGPSSATDQTSSGRNQKYLIPTRHH---RHHLINVARSKSLRPIKRDELDMILLSSCCI 251 P SS NQ +++ H R + +N + S +++ +KR+ D+ + Sbjct: 175 PPSSSSHAGALQESLNQNFMLIITHREVQREYNLNFSGSSTVQEVKRNVYDLTSIPVRHQ 234 Query: 252 RWEEWTTS 275 WE W S Sbjct: 235 LWEGWPAS 242
>FAF1_MOUSE (P54731) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = +3 Query: 81 PKGPSSATDQTSSGRNQKYLIPTRHH---RHHLINVARSKSLRPIKRDELDMILLSSCCI 251 P SS NQ +++ H R + +N + S +++ +KR+ D+ + Sbjct: 175 PPSSSSHAGALQESLNQNFMLIITHREVQREYNLNFSGSSTVQEVKRNVYDLTSIPVRHQ 234 Query: 252 RWEEWTTS 275 WE W S Sbjct: 235 LWEGWPAS 242
>YKU4_YEAST (P36041) Hypothetical 69.8 kDa protein in LOS1-TOR2 intergenic| region Length = 632 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 57 PIDLRTQTPKGPSSATDQTSSGRNQK 134 P DLR P+GPSS TD + R K Sbjct: 269 PTDLRPVIPRGPSSITDFLNLKRQDK 294
>RL2_NEIMA (Q9JX12) 50S ribosomal protein L2| Length = 277 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = +3 Query: 66 LRTQTPKGPSSATDQTSSGRNQKYLIPTRH----HRHH--LINVARSKSLRPIKRDELD 224 L P P +++GRN I TRH H+HH +++ R+K P K + ++ Sbjct: 24 LHKGAPYAPLLEKKNSTAGRNNNGHITTRHKGGGHKHHYRVVDFKRNKDGIPAKVERIE 82
>OTC_PEA (Q43814) Ornithine carbamoyltransferase, chloroplast precursor (EC| 2.1.3.3) (OTCase) (Ornithine transcarbamylase) Length = 375 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +2 Query: 65 FEDTNSQRPFISNRSDIVRKKPKIPYSNAASSSP 166 F S +P++S S R P + S+++SSSP Sbjct: 11 FTTVGSHKPYLSPSSHNFRHSPSVSLSSSSSSSP 44
>TNK1_MOUSE (Q99ML2) Non-receptor tyrosine-protein kinase TNK1 (EC 2.7.10.2)| (Kinase of embryonic stem cells) Length = 666 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/46 (30%), Positives = 19/46 (41%) Frame = +2 Query: 266 DYIQISKYKNIIQPTWLLNGACVCLVLNPTTKRLAPSQLVLGATGS 403 D S + ++Q WL G CV V P R+ P + GS Sbjct: 367 DRPSFSNLEGLLQEAWLSEGRCVREVTEPGALRMEPGDPITIIEGS 412
>KCNB2_HUMAN (Q92953) Potassium voltage-gated channel subfamily B member 2| (Voltage-gated potassium channel subunit Kv2.2) Length = 911 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +2 Query: 71 DTNSQRPFISNRSDIVRKKPKIPYSNAASSSPPHQCRQKQKLKTNK 208 +T+S + F + ++ +K +N +SSSP H QK ++ N+ Sbjct: 501 ETSSNKSFENKYQEVSQKDSHEQLNNTSSSSPQHLSAQKLEMLYNE 546
>VGNB_BPMV (Q9YJU5) Genome polyprotein B (RNA1 polyprotein) [Contains:| Protease cofactor (32 kDa protein); Putative helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (Membrane-binding protein) (58 kDa protein); Viral genome-linked protein (VPg); Picornain Length = 1850 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/57 (26%), Positives = 27/57 (47%) Frame = +3 Query: 90 PSSATDQTSSGRNQKYLIPTRHHRHHLINVARSKSLRPIKRDELDMILLSSCCIRWE 260 P D++ +NQ+YL+ T H H++++ + E LL+ C +WE Sbjct: 603 PGVEYDESDFTKNQRYLLKTWFHYHYVVD----------QTFESYADLLAHCFTKWE 649
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 286 VQKHNTAYVALKWSVCLSGSKSYH*TAGTFTVSLRSNGL 402 VQ H+T V ++ + YH TA F S+R+ GL Sbjct: 86 VQGHSTPVVQRRYPAAQPPERLYHGTATRFLDSIRAQGL 124
>END4_DESVH (Q72CQ9) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 282 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = +3 Query: 69 RTQTPKGPSSATDQTSSGRNQKYLIPTRHHRHHLINVARSKSLRPIKRDE 218 R TPK PS A + R + P H +LIN+A K E Sbjct: 37 RQWTPKAPSEADVEAFGRRRAAFGGPVFSHASYLINIANGDGAASAKAVE 86
>ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600| Length = 722 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 50 KVTNRFEDTNSQRPFISNRSDIVRKKPKIPYSNAASSSPPHQCRQKQK 193 K+ N+FE + S P +S S + +P+I SN ++ P+ QK Sbjct: 106 KIGNQFEKSTSDAPSVST-SQRISPRPQIHISNNYGNNSPNSSLLPQK 152
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 93 SSATDQTSSGRNQKYLIPTRHHRHHLI 173 S+AT Q S G+N+ YLI R+ R+ ++ Sbjct: 1338 STATYQHSFGKNKNYLIRGRYERYFIL 1364
>CJ012_HUMAN (Q8N655) Protein C10orf12| Length = 1247 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +2 Query: 71 DTNSQRPFISNRSDIVRKKPKIPYSNAASSSPPHQCRQKQKLKTNK 208 D +SQ P ++ + K KIP +A S PP +K+K TNK Sbjct: 1131 DRSSQPP---KKTSLKENKVKIPKKSAGKSCPP---SRKEKENTNK 1170
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +2 Query: 50 KVTNRFEDTNSQRPFISNRSDIVRKKPKIPYSNAASSSPPHQCRQKQKLKTNKTR*TGH 226 K+ ++ T + P SN + + KP + + PH+C Q K K++ TGH Sbjct: 286 KLVDQQNPTLGETPENSNLEEPLNPKP---HKKKSPGEKPHRCPQCGKCFARKSQLTGH 341
>ARGR1_STRP8 (Q7CMZ7) Arginine repressor 1| Length = 157 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = +1 Query: 73 HKLPKALHQQQIRHRQEETKNTLFQRGIIVTTSSMSPEAK 192 H+L ++L + H Q+E + L + GI +T +++S + K Sbjct: 8 HQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMK 47
>ARGR1_STRP6 (Q5XAY0) Arginine repressor 1| Length = 157 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = +1 Query: 73 HKLPKALHQQQIRHRQEETKNTLFQRGIIVTTSSMSPEAK 192 H+L ++L + H Q+E + L + GI +T +++S + K Sbjct: 8 HQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMK 47
>ARGR1_STRP3 (Q7CEX2) Arginine repressor 1| Length = 157 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = +1 Query: 73 HKLPKALHQQQIRHRQEETKNTLFQRGIIVTTSSMSPEAK 192 H+L ++L + H Q+E + L + GI +T +++S + K Sbjct: 8 HQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMK 47
>ARGR1_STRP1 (Q99YT5) Arginine repressor 1| Length = 157 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = +1 Query: 73 HKLPKALHQQQIRHRQEETKNTLFQRGIIVTTSSMSPEAK 192 H+L ++L + H Q+E + L + GI +T +++S + K Sbjct: 8 HQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMK 47
>YJ00_YEAST (P47101) Hypothetical 84.3 kDa protein in BNA1-GEA1 intergenic| region Length = 745 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 162 HHLINVARSKSLRPIKRDELDMILL 236 H L+NV RS RP + +LD+I L Sbjct: 245 HDLMNVGRSLLFRPFRSGDLDLIRL 269
>CMAH_XENLA (Q8AVF5) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase| (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase) (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc hydroxylase) (CMP-Neu5Ac hydroxylase) Length = 591 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +2 Query: 14 FLLERHTNYKDLKVTNRFEDTNSQRPFISNRSDIVRKKPK 133 + +E H + K +K TN D I N SD+V PK Sbjct: 363 YFVEEHPSDKYIKETNLKNDAAELNMLIRNTSDVVTWTPK 402 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,488,773 Number of Sequences: 219361 Number of extensions: 1109144 Number of successful extensions: 3044 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2995 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3042 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
