>emb|AL138834.28| Human DNA sequence from clone RP11-113A10 on chromosome 9 Contains three
              seven transmembrane helix receptor pseudogenes, a
              pseudogene similar to part of a seven transmembrane helix
              receptor, the RECK gene for
              reversion-inducing-cysteine-rich protein with kazal motifs
              (ST15, hRECK) and a CpG island, complete sequence
          Length = 123413

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 99     gcaacagatcagacatcgtcaggaag 124
              |||||||| |||||||||||||||||
Sbjct: 109488 gcaacagaccagacatcgtcaggaag 109513

>gb|AY423000.1| Danio rerio keratin 8 (KRT8) mRNA, complete cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 552 tggagcgtgtggctgtctggttct 529

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    gcggcatcatcgtcaccacc 168
              ||||||||||||||||||||
Sbjct: 561465 gcggcatcatcgtcaccacc 561446

>gb|AC126408.6| Mus musculus chromosome 13, clone RP23-216P14, complete sequence
          Length = 238967

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   atggagcgtgtgtctgtctg 340
             ||||||||||||||||||||
Sbjct: 59355 atggagcgtgtgtctgtctg 59336

>emb|AL589826.12| Human DNA sequence from clone RP11-67P15 on chromosome 6 Contains a
             ribosomal protein L6 (RPL6) pseudogene and a CpG island,
             complete sequence
          Length = 118097

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ccagattagtaagtacaaaa 293
             ||||||||||||||||||||
Sbjct: 60995 ccagattagtaagtacaaaa 61014

>emb|AL512648.21| Human DNA sequence from clone RP11-465C24 on chromosome 13, complete
             sequence
          Length = 61798

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    ctgaaagtaaccaatagatt 66
             ||||||||||||||||||||
Sbjct: 22934 ctgaaagtaaccaatagatt 22915

>emb|AL355862.16| Human DNA sequence from clone RP4-640E24 on chromosome 1q21.3-23.1
             Contains a pseudogene similar to the likely ortholog of
             mouse gene rich cluster C10 (GRCC10), complete sequence
          Length = 102512

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   atccagattagtaagtacaa 291
             ||||||||||||||||||||
Sbjct: 67214 atccagattagtaagtacaa 67233

>emb|AL139413.11| Human DNA sequence from clone RP5-1033K19 on chromosome 1 Contains a
             transcription elongation factor B (SIII) polypeptide 1
             (15kDa, elongin C) (TCEB1) pseudogene, a pseudogene
             similar to part of BET1 homolog (S. cerevisiae) (BET1),
             the RPE65 gene for 65kDa retinal pigment
             epithelium-specific protein and the 3' end of the gene for
              cell cycle control protein SDP35 (SDP35), complete
             sequence
          Length = 103139

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 329   tgtgtctgtctggttctaaatcct 352
             ||||||||||| ||||||||||||
Sbjct: 47634 tgtgtctgtctagttctaaatcct 47611

>gb|AC130388.6| Drosophila melanogaster X BAC CH221-14P20 (Children's Hospital Oakland
             Research Institute Drosophila melanogaster sheared DNA BAC
             Library) complete sequence
          Length = 117795

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    taaccaatagatttgaggac 73
             ||||||||||||||||||||
Sbjct: 42262 taaccaatagatttgaggac 42281

>gb|AC023714.5| Drosophila melanogaster X BAC RP98-19D19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 160100

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     taaccaatagatttgaggac 73
              ||||||||||||||||||||
Sbjct: 159689 taaccaatagatttgaggac 159670

>emb|AJ460000.1|DRE460000 Danio rerio partial mRNA for keratin 8 (krt8 gene)
          Length = 2045

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 412 tggagcgtgtggctgtctggttct 389

>emb|CR450756.4| Zebrafish DNA sequence from clone CH211-133J6 in linkage group 23,
             complete sequence
          Length = 131145

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 322   tggagcgtgtgtctgtctggttct 345
             ||||||||||| ||||||||||||
Sbjct: 21839 tggagcgtgtggctgtctggttct 21862

>gb|BC067610.1| Danio rerio keratin, type 2, gene 8, mRNA (cDNA clone MGC:85764
           IMAGE:6960350), complete cds
          Length = 2220

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 549 tggagcgtgtggctgtctggttct 526

>ref|NM_200080.2| Danio rerio keratin, type 2, gene 8 (krt2-8), mRNA
          Length = 2220

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 549 tggagcgtgtggctgtctggttct 526

>gb|AC012609.7| Homo sapiens chromosome 5 clone CTC-531M23, complete sequence
          Length = 148433

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    aagcaaaagcttaagaccaa 204
              ||||||||||||||||||||
Sbjct: 127602 aagcaaaagcttaagaccaa 127621

>gb|AC079942.12| Homo sapiens 3 BAC RP11-469L4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171832

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aagaaaccaaaaataccttattcc 145
              |||||||| |||||||||||||||
Sbjct: 129803 aagaaacccaaaataccttattcc 129826

>gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, complete sequence
          Length = 149207

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   gaagaaaccaaaaatacctt 140
             ||||||||||||||||||||
Sbjct: 48991 gaagaaaccaaaaatacctt 48972

>ref|XM_703024.1| PREDICTED: Danio rerio similar to type II cytokeratin, transcript
           variant 8 (LOC560694), mRNA
          Length = 2277

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 591 tggagcgtgtggctgtctggttct 568

>ref|XM_703022.1| PREDICTED: Danio rerio similar to type II cytokeratin, transcript
           variant 6 (LOC560694), mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 591 tggagcgtgtggctgtctggttct 568

>ref|XM_703021.1| PREDICTED: Danio rerio similar to type II cytokeratin, transcript
           variant 5 (LOC560694), mRNA
          Length = 2181

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 591 tggagcgtgtggctgtctggttct 568

>ref|XM_703020.1| PREDICTED: Danio rerio similar to type II cytokeratin, transcript
           variant 4 (LOC560694), mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 591 tggagcgtgtggctgtctggttct 568

>ref|XM_680695.1| PREDICTED: Danio rerio similar to type II cytokeratin, transcript
           variant 1 (LOC560694), mRNA
          Length = 2277

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 tggagcgtgtgtctgtctggttct 345
           ||||||||||| ||||||||||||
Sbjct: 591 tggagcgtgtggctgtctggttct 568

>dbj|AK163900.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230032F19 product:hypothetical
            protein, full insert sequence
          Length = 3941

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  atggagcgtgtgtctgtctg 340
            ||||||||||||||||||||
Sbjct: 2093 atggagcgtgtgtctgtctg 2112

>gb|AC007082.5|AC007082 Drosophila melanogaster, chromosome 2L, region 37D, BAC clone
             BACR28G24, complete sequence
          Length = 171375

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   aagcaaaagcttaagaccaataaa 208
             ||||||||||||||||| ||||||
Sbjct: 59766 aagcaaaagcttaagacaaataaa 59743

>gb|AC021851.5| Homo sapiens BAC clone RP11-438L19 from 2, complete sequence
          Length = 202078

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 58    caatagatttgaggacacaaactc 81
             ||||||||||||| ||||||||||
Sbjct: 78076 caatagatttgagaacacaaactc 78053

>gb|AC112128.4| Homo sapiens 3 BAC RP11-24O5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179604

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    aaaccaaaaataccttattc 144
              ||||||||||||||||||||
Sbjct: 164110 aaaccaaaaataccttattc 164129

>emb|BX119982.8| Zebrafish DNA sequence from clone CH211-214J4 in linkage group 23,
              complete sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 322    tggagcgtgtgtctgtctggttct 345
              ||||||||||| ||||||||||||
Sbjct: 138868 tggagcgtgtggctgtctggttct 138891

>gb|AC115848.10| Mus musculus chromosome 3, clone RP24-248L23, complete sequence
          Length = 143257

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 364   gctggcaccttcacagttagtctt 387
             ||||||||||||||| ||||||||
Sbjct: 18106 gctggcaccttcacacttagtctt 18083

>gb|AE003662.3| Drosophila melanogaster chromosome 2L, section 71 of 83 of the complete
              sequence
          Length = 266205

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 185    aagcaaaagcttaagaccaataaa 208
              ||||||||||||||||| ||||||
Sbjct: 191338 aagcaaaagcttaagacaaataaa 191315

>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
             sequence
          Length = 326403

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    taaccaatagatttgaggac 73
             ||||||||||||||||||||
Sbjct: 18564 taaccaatagatttgaggac 18583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,740,352
Number of Sequences: 3902068
Number of extensions: 3740352
Number of successful extensions: 72131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72075
Number of HSP's gapped (non-prelim): 56
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)