Clone Name | rbastl56c06 |
---|---|
Clone Library Name | barley_pub |
>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)| Length = 915 Score = 34.7 bits (78), Expect = 0.094 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = -2 Query: 358 GEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 251 G ED E E + V +EV GLE+ +GK F M+W M I Sbjct: 881 GLED--EEENKSVMVEVRGLEMLVGKDFNMSWKMGI 914
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 31.6 bits (70), Expect = 0.80 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 15 NGRMQFHSPARLSFNG*IRVHKWCSRVTNPHTSYITDSSTMN 140 N R F P LS WCSR+T+P++++ S +N Sbjct: 600 NARNSFEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIIN 641
>YBIB_ECOLI (P30177) Hypothetical protein ybiB| Length = 320 Score = 31.2 bits (69), Expect = 1.0 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = -2 Query: 418 TAVATSSPYFLAADAQVMHQGEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 251 T V T + + L +H G+ A E + V M VG PL K M W M + Sbjct: 122 TRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGV 177
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 282 FPSGNSSPPTSIVTPLFSPSTASSSPWCITCASAA 386 FPSG+ PP + +PL S S +P +C+SA+ Sbjct: 263 FPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSAS 297
>CB024_RAT (Q6P7B2) Protein C2orf24 homolog| Length = 408 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = +3 Query: 216 AEANAARFSYASMCMFHVMVKLFPSGNSSPPTSIVTP--LFSPSTASSSPWCITCASA 383 A ++ + ASM + H + L S + SPP + P L P + P C+T S+ Sbjct: 238 AYVSSVALAVASMAVIHQSLGLSSSPSPSPPELTLVPKNLLQPCIPAPVPQCLTNVSS 295
>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1531 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +2 Query: 227 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 367 C ++ C V CHG L Q P N+ R+ L L+G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)| Length = 1531 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +2 Query: 227 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 367 C ++ C V CHG L Q P N+ R+ L L+G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>RFT1_YARLI (Q6C6S3) Oligosaccharide translocation protein RFT1| Length = 673 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +2 Query: 275 EALPQRQLQPANLHRHAPLLALHGVLFSLVHHLRVRGQEVGAR 403 E+ Q PA+L R A L + V+F+ V L ++ ++GAR Sbjct: 507 ESFVQSVATPADLRRQAVALGVFSVVFATVGGLLMKTMDLGAR 549
>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1534 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +2 Query: 227 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 367 C ++ C V CHG L Q P N+ R+ L L+G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>OTX2_XENLA (Q91813) Homeobox protein OTX2 (XOTX2) (Orthodenticle 2)| (Orthodenticle-A-like protein) Length = 288 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +3 Query: 288 SGNSSPPTSIVTPLFSPSTASSSPW 362 SG SPP+S P+ S STA S W Sbjct: 128 SGQFSPPSSTSVPVISSSTAPVSIW 152
>Y1742_STRPN (Q97P99) UPF0348 protein SP1742| Length = 365 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +2 Query: 20 PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 115 P+++S+P KT+ W + + + F GN P H L Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155
>Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587| Length = 365 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +2 Query: 20 PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 115 P+++S+P KT+ W + + + F GN P H L Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,706,132 Number of Sequences: 219361 Number of extensions: 819497 Number of successful extensions: 3140 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2806 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3136 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)