ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-) 35 0.094
2MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 32 0.80
3YBIB_ECOLI (P30177) Hypothetical protein ybiB 31 1.0
4TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) ... 31 1.4
5CB024_RAT (Q6P7B2) Protein C2orf24 homolog 28 6.7
6SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Mu... 28 6.7
7SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1) 28 6.7
8RFT1_YARLI (Q6C6S3) Oligosaccharide translocation protein RFT1 28 6.7
9SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (... 28 6.7
10OTX2_XENLA (Q91813) Homeobox protein OTX2 (XOTX2) (Orthodenticle... 28 8.8
11Y1742_STRPN (Q97P99) UPF0348 protein SP1742 28 8.8
12Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587 28 8.8

>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)|
          Length = 915

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -2

Query: 358 GEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 251
           G ED  E E + V +EV GLE+ +GK F M+W M I
Sbjct: 881 GLED--EEENKSVMVEVRGLEMLVGKDFNMSWKMGI 914



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 15  NGRMQFHSPARLSFNG*IRVHKWCSRVTNPHTSYITDSSTMN 140
           N R  F  P  LS         WCSR+T+P++++    S +N
Sbjct: 600 NARNSFEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIIN 641



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>YBIB_ECOLI (P30177) Hypothetical protein ybiB|
          Length = 320

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 418 TAVATSSPYFLAADAQVMHQGEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 251
           T V T + + L      +H G+  A   E + V M VG    PL K   M W M +
Sbjct: 122 TRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGV 177



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>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 282 FPSGNSSPPTSIVTPLFSPSTASSSPWCITCASAA 386
           FPSG+  PP  + +PL   S  S +P   +C+SA+
Sbjct: 263 FPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSAS 297



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>CB024_RAT (Q6P7B2) Protein C2orf24 homolog|
          Length = 408

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 216 AEANAARFSYASMCMFHVMVKLFPSGNSSPPTSIVTP--LFSPSTASSSPWCITCASA 383
           A  ++   + ASM + H  + L  S + SPP   + P  L  P   +  P C+T  S+
Sbjct: 238 AYVSSVALAVASMAVIHQSLGLSSSPSPSPPELTLVPKNLLQPCIPAPVPQCLTNVSS 295



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>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple|
           epidermal growth factor-like domains 4)
          Length = 1531

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 227 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 367
           C ++  C    V CHG  L   Q  P N+ R+   L L+G   + +H
Sbjct: 34  CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77



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>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)|
          Length = 1531

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 227 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 367
           C ++  C    V CHG  L   Q  P N+ R+   L L+G   + +H
Sbjct: 34  CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77



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>RFT1_YARLI (Q6C6S3) Oligosaccharide translocation protein RFT1|
          Length = 673

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 275 EALPQRQLQPANLHRHAPLLALHGVLFSLVHHLRVRGQEVGAR 403
           E+  Q    PA+L R A  L +  V+F+ V  L ++  ++GAR
Sbjct: 507 ESFVQSVATPADLRRQAVALGVFSVVFATVGGLLMKTMDLGAR 549



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>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple|
           epidermal growth factor-like domains 4)
          Length = 1534

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 227 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 367
           C ++  C    V CHG  L   Q  P N+ R+   L L+G   + +H
Sbjct: 34  CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77



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>OTX2_XENLA (Q91813) Homeobox protein OTX2 (XOTX2) (Orthodenticle 2)|
           (Orthodenticle-A-like protein)
          Length = 288

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 288 SGNSSPPTSIVTPLFSPSTASSSPW 362
           SG  SPP+S   P+ S STA  S W
Sbjct: 128 SGQFSPPSSTSVPVISSSTAPVSIW 152



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>Y1742_STRPN (Q97P99) UPF0348 protein SP1742|
          Length = 365

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 20  PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 115
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155



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>Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587|
          Length = 365

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 20  PNAVSFPCKTELQWVNQSSQMVFEGNQPPHKL 115
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,706,132
Number of Sequences: 219361
Number of extensions: 819497
Number of successful extensions: 3140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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