ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184232.2| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
3dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
4dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
5dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
6gb|AY106982.1| Zea mays PCO102337 mRNA sequence 94 4e-16
7emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 44 0.36
8emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, c... 44 0.36
9gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 5.6
10ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
11gb|AY623084.1| Crocus sativus unknown mRNA 40 5.6
12ref|XM_001000967.1| PREDICTED: Mus musculus similar to Myosin he... 40 5.6
13ref|XM_001002743.1| PREDICTED: Mus musculus similar to Myosin he... 40 5.6
14ref|XM_992311.1| PREDICTED: Mus musculus similar to Myosin heavy... 40 5.6
15gb|AC122233.4| Mus musculus BAC clone RP23-137D14 from 16, compl... 40 5.6
16gb|AC166563.2| Spironucleus vortens clone JGIBAWF-9G17, complete... 40 5.6
17gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 5.6
18emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on ch... 40 5.6
19emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 5.6
20gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, comp... 40 5.6
21gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, c... 40 5.6
22gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase su... 40 5.6
23gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase su... 40 5.6
24gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase sub... 40 5.6
25gb|AF315118.1|AF315118 Populus euphratica clone PSR1 salt-induce... 40 5.6
26gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, compl... 40 5.6
27dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
28dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
29dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.6
30dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
31ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 ... 40 5.6
32gb|J04639.1|TTHTAQP1A Thermus aquaticus DNA polymerase (PolI) gene 40 5.6
33dbj|D32013.1|TTHDNAP Thermus aquaticus gene for DNA polymerase, ... 40 5.6 
>ref|NM_184232.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 242  ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 301
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975

                                   
Query: 302  cccgccaacctccatcgtcacgc 324
            ||| || ||||||| | ||||||
Sbjct: 2974 ccctcccacctccaccatcacgc 2952
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 242     ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 301
               |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 1701639 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 1701580

                                      
Query: 302     cccgccaacctccatcgtcacgc 324
               ||| || ||||||| | ||||||
Sbjct: 1701579 ccctcccacctccaccatcacgc 1701557



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      cacgcccctcttctcgccct 339
                ||||||||||||||||||||
Sbjct: 35501711 cacgcccctcttctcgccct 35501692
to top
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 242   ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 301
             |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 43982 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 43923

                                    
Query: 302   cccgccaacctccatcgtcacgc 324
             ||| || ||||||| | ||||||
Sbjct: 43922 ccctcccacctccaccatcacgc 43900
to top
>dbj|AK102309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B18, full
            insert sequence
          Length = 3486

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 242  ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 301
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 3035 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2976

                                   
Query: 302  cccgccaacctccatcgtcacgc 324
            ||| || ||||||| | ||||||
Sbjct: 2975 ccctcccacctccaccatcacgc 2953
to top
>dbj|AK063966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A04, full
            insert sequence
          Length = 3193

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                        
Query: 242  ctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactccag 301
            |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||
Sbjct: 3034 ctatgcttcgatctgcatgttccaagtcatggtgaagctcttgcccagcggcaatgccag 2975

                                   
Query: 302  cccgccaacctccatcgtcacgc 324
            ||| || ||||||| | ||||||
Sbjct: 2974 ccctcccacctccaccatcacgc 2952
to top
>gb|AY106982.1| Zea mays PCO102337 mRNA sequence
          Length = 641

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                       
Query: 241 cctatgcttcgatgtgcatgttccatgtcatggtgaagctcttccccagcggcaactcca 300
           |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||  |||
Sbjct: 207 cctatgcttcgatccgcatgttccatgtcatggtgaagctcttcccgagcggcaatgcca 266

                  
Query: 301 gcccgcc 307
           |||||||
Sbjct: 267 gcccgcc 273
to top
>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
              complete sequence
          Length = 197042

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 61     ggtgaatcagagttcacaaatggtgt 86
              ||||| ||||||||||||||||||||
Sbjct: 168693 ggtgattcagagttcacaaatggtgt 168668
to top
>emb|AL935200.9| Zebrafish DNA sequence from clone CH211-237I5, complete sequence
          Length = 160710

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 61    ggtgaatcagagttcacaaatggtgt 86
             ||||| ||||||||||||||||||||
Sbjct: 56188 ggtgattcagagttcacaaatggtgt 56213
to top
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    tttaagctctataaatttaa 165
              ||||||||||||||||||||
Sbjct: 798940 tttaagctctataaatttaa 798959
to top
>ref|NM_190436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 cacgcccctcttctcgccct 339
           ||||||||||||||||||||
Sbjct: 24  cacgcccctcttctcgccct 43
to top
>gb|AY623084.1| Crocus sativus unknown mRNA
          Length = 532

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 atggtgaagctcttccccag 289
           ||||||||||||||||||||
Sbjct: 359 atggtgaagctcttccccag 378
to top
>ref|XM_001000967.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle
            alpha isoform (MyHC-alpha) (LOC639686), mRNA
          Length = 5817

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ttccatgtcatggtgaagct 280
            ||||||||||||||||||||
Sbjct: 3549 ttccatgtcatggtgaagct 3530
to top
>ref|XM_001002743.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle
            alpha isoform (MyHC-alpha) (LOC677358), mRNA
          Length = 5820

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ttccatgtcatggtgaagct 280
            ||||||||||||||||||||
Sbjct: 3549 ttccatgtcatggtgaagct 3530
to top
>ref|XM_992311.1| PREDICTED: Mus musculus similar to Myosin heavy chain, cardiac muscle
            alpha isoform (MyHC-alpha) (LOC667772), mRNA
          Length = 5820

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ttccatgtcatggtgaagct 280
            ||||||||||||||||||||
Sbjct: 3549 ttccatgtcatggtgaagct 3530
to top
>gb|AC122233.4| Mus musculus BAC clone RP23-137D14 from 16, complete sequence
          Length = 203964

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ttccatgtcatggtgaagct 280
             ||||||||||||||||||||
Sbjct: 52009 ttccatgtcatggtgaagct 52028
to top
>gb|AC166563.2| Spironucleus vortens clone JGIBAWF-9G17, complete sequence
          Length = 40267

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 372   tgcgcgtccgcggccaagaagtag 395
             |||||||||||||||| |||||||
Sbjct: 19060 tgcgcgtccgcggccaggaagtag 19037
to top
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     actttttaagctctataaat 161
               ||||||||||||||||||||
Sbjct: 1103611 actttttaagctctataaat 1103630
to top
>emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on chromosome 10 Contains
             part of the gene for VPS10 domain receptor protein SORCS
             1, complete sequence
          Length = 158724

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   catgcagacggaagcagagg 222
             ||||||||||||||||||||
Sbjct: 93875 catgcagacggaagcagagg 93894
to top
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
             3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tttaagctctataaatttaa 165
             ||||||||||||||||||||
Sbjct: 97835 tttaagctctataaatttaa 97854
to top
>gb|AC097061.2| Homo sapiens chromosome 1 clone RP11-415L24, complete sequence
          Length = 165311

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   atgcagacggaagcagaggc 223
             ||||||||||||||||||||
Sbjct: 90987 atgcagacggaagcagaggc 90968
to top
>gb|AC018793.12| Homo sapiens chromosome 11, clone RP11-437G21, complete sequence
          Length = 202956

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   aagcagaggcaaatgcagct 233
             ||||||||||||||||||||
Sbjct: 99826 aagcagaggcaaatgcagct 99807
to top
>gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttttaagctctataaattta 164
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
to top
>gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttttaagctctataaattta 164
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
to top
>gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ttttaagctctataaattta 164
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
to top
>gb|AF315118.1|AF315118 Populus euphratica clone PSR1 salt-induced mRNA sequence
          Length = 1079

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 atggtgaagctcttccccag 289
           ||||||||||||||||||||
Sbjct: 207 atggtgaagctcttccccag 188
to top
>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence
          Length = 181663

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    agctctataaatttaaatta 169
              ||||||||||||||||||||
Sbjct: 175855 agctctataaatttaaatta 175836
to top
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0446G04
          Length = 143515

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   cacgcccctcttctcgccct 339
             ||||||||||||||||||||
Sbjct: 31898 cacgcccctcttctcgccct 31879
to top
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1088C09
          Length = 154084

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    cacgcccctcttctcgccct 339
              ||||||||||||||||||||
Sbjct: 125660 cacgcccctcttctcgccct 125641
to top
>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22
          Length = 82035

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tactttttaagctctataaa 160
             ||||||||||||||||||||
Sbjct: 24387 tactttttaagctctataaa 24368
to top
>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full
           insert sequence
          Length = 1978

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 320 cacgcccctcttctcgccct 339
           ||||||||||||||||||||
Sbjct: 70  cacgcccctcttctcgccct 89
to top
>ref|XM_315898.2| Anopheles gambiae str. PEST ENSANGP00000004512 (ENSANGG00000003543),
            partial mRNA
          Length = 3441

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  gacgacgacgagtcgaacga 194
            ||||||||||||||||||||
Sbjct: 1237 gacgacgacgagtcgaacga 1256
to top
>gb|J04639.1|TTHTAQP1A Thermus aquaticus DNA polymerase (PolI) gene
          Length = 2626

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  atggtgaagctcttccccag 289
            ||||||||||||||||||||
Sbjct: 2413 atggtgaagctcttccccag 2432
to top
>dbj|D32013.1|TTHDNAP Thermus aquaticus gene for DNA polymerase, complete cds
          Length = 3026

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  atggtgaagctcttccccag 289
            ||||||||||||||||||||
Sbjct: 2293 atggtgaagctcttccccag 2312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,432,939
Number of Sequences: 3902068
Number of extensions: 3432939
Number of successful extensions: 78578
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78402
Number of HSP's gapped (non-prelim): 176
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top