ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUVH7_ARATH (Q9C5P1) Histone-lysine N-methyltransferase, H3 lysi... 30 1.6
2PURA_DROME (Q9Y0Y2) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 30 2.1
3EF2_SULAC (P23112) Elongation factor 2 (EF-2) 28 4.8
4SACB_STRMU (P11701) Levansucrase precursor (EC 2.4.1.10) (Beta-D... 28 6.2
5UBP22_MOUSE (Q5DU02) Ubiquitin carboxyl-terminal hydrolase 22 (E... 28 6.2
6UBP22_HUMAN (Q9UPT9) Ubiquitin carboxyl-terminal hydrolase 22 (E... 28 8.1

>SUVH7_ARATH (Q9C5P1) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7)
           (H3-K9-HMTase 7) (Suppressor of variegation 3-9 homolog
           protein 7) (Su(var)3-9 homolog protein 7) (Protein SET
           DOMAIN GR
          Length = 693

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
 Frame = +1

Query: 16  GCSNC----ILHRNCNCVTRNYD 72
           GC NC     +H+NC CV RN D
Sbjct: 457 GCQNCRHQPCMHQNCTCVQRNGD 479



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>PURA_DROME (Q9Y0Y2) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 447

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 254 DRVEPCIVIHKHVQGIQEAEKGKQEIKKRCEGL 156
           DR       H+HV G+QEAEKG + +    +G+
Sbjct: 125 DRAHLVFDFHQHVDGMQEAEKGGKSLGTTKKGI 157



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>EF2_SULAC (P23112) Elongation factor 2 (EF-2)|
          Length = 736

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 257 EDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCEGLVV 150
           E+RV P + I+K  + I+E +   QEI+KR   L++
Sbjct: 136 EERVRPILFINKVDRLIKELKLSSQEIQKRLIDLII 171



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>SACB_STRMU (P11701) Levansucrase precursor (EC 2.4.1.10)|
           (Beta-D-fructofuranosyl transferase) (Sucrose
           6-fructosyl transferase)
          Length = 795

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 5   KIIKDVAIVSCTETATVSQETTINRYSGATTELGDTFYRSCGKNPQNARQLSPRN 169
           K+I D A V    + T  Q  T+ + S +T E+G T  ++  K  + A   +P+N
Sbjct: 94  KVITDNAAVESKASKTKDQAATVTKTSASTPEVGQTNEKA--KATKEADITTPKN 146



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>UBP22_MOUSE (Q5DU02) Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 22)
           (Ubiquitin-specific-processing protease 22)
           (Deubiquitinating enzyme 22)
          Length = 525

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 163 RA*LSCVLWIFTTRAVEGVPQFCCSTTVSIYRSFL*HSCSFCARYNCY 20
           RA   C +W  T  A +   + C      I+ + L HSC +C  + C+
Sbjct: 39  RAIYQCFVWSGTAEARKRKAKSCVCHVCGIHLNRL-HSCLYCVFFGCF 85



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>UBP22_HUMAN (Q9UPT9) Ubiquitin carboxyl-terminal hydrolase 22 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 22)
           (Ubiquitin-specific-processing protease 22)
           (Deubiquitinating enzyme 22)
          Length = 525

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 163 RA*LSCVLWIFTTRAVEGVPQFCCSTTVSIYRSFL*HSCSFCARYNCY 20
           RA   C +W  T  A +   + C      ++ + L HSC +C  + C+
Sbjct: 39  RAIYQCFVWSGTAEARKRKAKSCICHVCGVHLNRL-HSCLYCVFFGCF 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,913,103
Number of Sequences: 219361
Number of extensions: 590483
Number of successful extensions: 1705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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