Clone Name | rbastl56b08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 255 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttc 301 |||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct: 48394 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttc 48348
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 255 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttc 301 |||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct: 17671636 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttc 17671590
>dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full insert sequence Length = 3254 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 255 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttc 301 |||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct: 2751 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttc 2705
>dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H09, full insert sequence Length = 1888 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 255 cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttc 301 |||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct: 1480 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttc 1434
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence Length = 1254 Score = 48.1 bits (24), Expect = 0.016 Identities = 39/44 (88%) Strand = Plus / Minus Query: 257 tacagcatgctatcggtccttgcaggcagcctcctgaagaagtt 300 ||||||||||| |||||||| || ||||| | |||||||||||| Sbjct: 990 tacagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
>ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_F08.109 mRNA Length = 3486 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 3326 ttgcaggtagcctcctgaagaagttc 3301
>ref|XM_478107.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3402 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 3207 ttgcaggtagcctcctgaagaagttc 3182
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 17633773 ttgcaggtagcctcctgaagaagttc 17633798
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 37806 ttgcaggtagcctcctgaagaagttc 37831
>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0045A07 Length = 174165 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 161722 ttgcaggtagcctcctgaagaagttc 161747
>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence Length = 154095 Score = 44.1 bits (22), Expect = 0.25 Identities = 34/38 (89%) Strand = Plus / Minus Query: 260 agcatgctatcggtccttgcaggcagcctcctgaagaa 297 ||||||| ||| || |||||||||| |||||||||||| Sbjct: 91505 agcatgcaatcagttcttgcaggcaacctcctgaagaa 91468
>dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114M07, full insert sequence Length = 3592 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 3391 ttgcaggtagcctcctgaagaagttc 3366
>dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095C11, full insert sequence Length = 3402 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 3207 ttgcaggtagcctcctgaagaagttc 3182
>dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M15, full insert sequence Length = 3486 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 276 ttgcaggcagcctcctgaagaagttc 301 ||||||| |||||||||||||||||| Sbjct: 3326 ttgcaggtagcctcctgaagaagttc 3301
>ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 mRNA, complete cds Length = 2513 Score = 42.1 bits (21), Expect = 1.00 Identities = 36/41 (87%) Strand = Plus / Minus Query: 260 agcatgctatcggtccttgcaggcagcctcctgaagaagtt 300 ||||||| ||| || ||||| || ||||||||||||||||| Sbjct: 2327 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 2287
>ref|XM_468390.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3000 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 ggcagcctcctgaagaagttc 301 ||||||||||||||||||||| Sbjct: 2975 ggcagcctcctgaagaagttc 2955
>gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 1.00 Identities = 36/41 (87%) Strand = Plus / Minus Query: 260 agcatgctatcggtccttgcaggcagcctcctgaagaagtt 300 ||||||| ||| || ||||| || ||||||||||||||||| Sbjct: 869 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 829
>gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, complete cds Length = 1126 Score = 42.1 bits (21), Expect = 1.00 Identities = 36/41 (87%) Strand = Plus / Minus Query: 260 agcatgctatcggtccttgcaggcagcctcctgaagaagtt 300 ||||||| ||| || ||||| || ||||||||||||||||| Sbjct: 934 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 894
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence Length = 124511 Score = 42.1 bits (21), Expect = 1.00 Identities = 36/41 (87%) Strand = Plus / Minus Query: 260 agcatgctatcggtccttgcaggcagcctcctgaagaagtt 300 ||||||| ||| || ||||| || ||||||||||||||||| Sbjct: 123365 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 123325
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 ggcagcctcctgaagaagttc 301 ||||||||||||||||||||| Sbjct: 34979788 ggcagcctcctgaagaagttc 34979768
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete sequence Length = 92652 Score = 42.1 bits (21), Expect = 1.00 Identities = 36/41 (87%) Strand = Plus / Minus Query: 260 agcatgctatcggtccttgcaggcagcctcctgaagaagtt 300 ||||||| ||| || ||||| || ||||||||||||||||| Sbjct: 18385 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 18345
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643F09 Length = 161001 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 ggcagcctcctgaagaagttc 301 ||||||||||||||||||||| Sbjct: 40129 ggcagcctcctgaagaagttc 40109
>gb|AY112391.1| Zea mays CL5467_2 mRNA sequence Length = 648 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 276 ttgcaggcagcctcctgaagaagtt 300 ||||||| ||||||||||||||||| Sbjct: 245 ttgcaggtagcctcctgaagaagtt 269
>gb|AY111168.1| Zea mays CL5467_1 mRNA sequence Length = 574 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 276 ttgcaggcagcctcctgaagaagtt 300 ||||||| ||||||||||||||||| Sbjct: 215 ttgcaggtagcctcctgaagaagtt 239
>gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete sequence Length = 32563 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gcaacggaaaaggctacaaa 113 |||||||||||||||||||| Sbjct: 5041 gcaacggaaaaggctacaaa 5060
>emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metallothionein 2C, exons 1-4 Length = 9629 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aaacacagacatacaggcaa 97 |||||||||||||||||||| Sbjct: 7720 aaacacagacatacaggcaa 7701
>gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, complete sequence Length = 91792 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aaaacacagacatacaggca 96 |||||||||||||||||||| Sbjct: 76720 aaaacacagacatacaggca 76701
>gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complete sequence Length = 91810 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aaaacacagacatacaggca 96 |||||||||||||||||||| Sbjct: 38386 aaaacacagacatacaggca 38405
>gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequence Length = 33410 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ggaaaaggctacaaacaacg 118 |||||||||||||||||||| Sbjct: 4549 ggaaaaggctacaaacaacg 4530
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence Length = 612 Score = 40.1 bits (20), Expect = 3.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 257 tacagcatgctatcggtccttgcaggcagcctcctgaagaagtt 300 ||||||||||| || ||||| || ||||| | |||||||||||| Sbjct: 352 tacagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
>gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, complete sequence Length = 40189 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 accatcctaaaacacagaca 88 |||||||||||||||||||| Sbjct: 12200 accatcctaaaacacagaca 12181 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,594,376 Number of Sequences: 3902068 Number of extensions: 2594376 Number of successful extensions: 40236 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40161 Number of HSP's gapped (non-prelim): 75 length of query: 301 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 279 effective length of database: 17,147,199,772 effective search space: 4784068736388 effective search space used: 4784068736388 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)