ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|D37945.1|WHTPH2B15D Triticum aestivum gene for protein H2B15... 44 0.16
2ref|XM_380791.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 42 0.62
3dbj|AP000940.8| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 0.62
4dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 42 0.62
5emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 2.4
6gb|AC138732.2| Pongo pygmaeus clone CH253-434E18, complete sequence 38 9.6
7gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, co... 38 9.6
8emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chr... 38 9.6
9gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold 38 9.6
10emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C ... 38 9.6
11emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chro... 38 9.6

>dbj|D37945.1|WHTPH2B15D Triticum aestivum gene for protein H2B153, complete cds
          Length = 3209

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 144  aagcgctgttactatttctcca 165
            ||||||||||||||||||||||
Sbjct: 1833 aagcgctgttactatttctcca 1812



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 70   gcagcgattgacagagaaacgcgagct 96
            |||| |||| |||||||||||||||||
Sbjct: 2102 gcagagatttacagagaaacgcgagct 2076



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>ref|XM_380791.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00615.1)
           partial mRNA
          Length = 4536

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 124 aggatcgtggcaagaactgga 144
           |||||||||||||||||||||
Sbjct: 332 aggatcgtggcaagaactgga 352



 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 126  gatcgtggcaagaactggaagcgc 149
            |||| |||||||||||||||||||
Sbjct: 2275 gatcatggcaagaactggaagcgc 2298



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>dbj|AP000940.8| Homo sapiens genomic DNA, chromosome 18 clone:RP11-855E1, complete
             sequence
          Length = 159082

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    gactcttttgccagttaactgaaac 36
             ||||||||||||| |||||||||||
Sbjct: 48651 gactcttttgccatttaactgaaac 48675



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>dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-870F11, complete
              sequences
          Length = 216975

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 12     gactcttttgccagttaactgaaac 36
              ||||||||||||| |||||||||||
Sbjct: 197334 gactcttttgccatttaactgaaac 197358



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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     cagcgattgacagagaaacg 90
              ||||||||||||||||||||
Sbjct: 473419 cagcgattgacagagaaacg 473438



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>gb|AC138732.2| Pongo pygmaeus clone CH253-434E18, complete sequence
          Length = 148504

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    gggtcgtcagcaagttcag 56
             |||||||||||||||||||
Sbjct: 26457 gggtcgtcagcaagttcag 26475



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>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence
          Length = 188701

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 161   ctccaaacaaccagcacag 179
             |||||||||||||||||||
Sbjct: 68744 ctccaaacaaccagcacag 68726



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>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a
             fatty acid binding protein, muscle and heart
             (mammary-derived growth inhibitor) pseudogene and part of
             the AKT3 gene for  v-akt murine thymoma viral oncogene
             homolog 3 (protein kinase B, gamma), complete sequence
          Length = 127036

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 152   ttactatttctccaaacaa 170
             |||||||||||||||||||
Sbjct: 60998 ttactatttctccaaacaa 61016



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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 38      gggtcgtcagcaagttcag 56
               |||||||||||||||||||
Sbjct: 1119285 gggtcgtcagcaagttcag 1119303



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>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5)
          Length = 893329

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    aagaactggaagcgctgtt 153
              |||||||||||||||||||
Sbjct: 101017 aagaactggaagcgctgtt 100999



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>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete
             sequence
          Length = 190964

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 107   atccaaccagcacaaatag 125
             |||||||||||||||||||
Sbjct: 58363 atccaaccagcacaaatag 58345


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,417,454
Number of Sequences: 3902068
Number of extensions: 1417454
Number of successful extensions: 89228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89170
Number of HSP's gapped (non-prelim): 58
length of query: 194
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 172
effective length of database: 17,147,199,772
effective search space: 2949318360784
effective search space used: 2949318360784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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