Clone Name | rbastl56b07 |
---|---|
Clone Library Name | barley_pub |
>dbj|D37945.1|WHTPH2B15D Triticum aestivum gene for protein H2B153, complete cds Length = 3209 Score = 44.1 bits (22), Expect = 0.16 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 aagcgctgttactatttctcca 165 |||||||||||||||||||||| Sbjct: 1833 aagcgctgttactatttctcca 1812 Score = 38.2 bits (19), Expect = 9.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 70 gcagcgattgacagagaaacgcgagct 96 |||| |||| ||||||||||||||||| Sbjct: 2102 gcagagatttacagagaaacgcgagct 2076
>ref|XM_380791.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00615.1) partial mRNA Length = 4536 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 aggatcgtggcaagaactgga 144 ||||||||||||||||||||| Sbjct: 332 aggatcgtggcaagaactgga 352 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 gatcgtggcaagaactggaagcgc 149 |||| ||||||||||||||||||| Sbjct: 2275 gatcatggcaagaactggaagcgc 2298
>dbj|AP000940.8| Homo sapiens genomic DNA, chromosome 18 clone:RP11-855E1, complete sequence Length = 159082 Score = 42.1 bits (21), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 gactcttttgccagttaactgaaac 36 ||||||||||||| ||||||||||| Sbjct: 48651 gactcttttgccatttaactgaaac 48675
>dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-870F11, complete sequences Length = 216975 Score = 42.1 bits (21), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 gactcttttgccagttaactgaaac 36 ||||||||||||| ||||||||||| Sbjct: 197334 gactcttttgccatttaactgaaac 197358
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cagcgattgacagagaaacg 90 |||||||||||||||||||| Sbjct: 473419 cagcgattgacagagaaacg 473438
>gb|AC138732.2| Pongo pygmaeus clone CH253-434E18, complete sequence Length = 148504 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 gggtcgtcagcaagttcag 56 ||||||||||||||||||| Sbjct: 26457 gggtcgtcagcaagttcag 26475
>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence Length = 188701 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 161 ctccaaacaaccagcacag 179 ||||||||||||||||||| Sbjct: 68744 ctccaaacaaccagcacag 68726
>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a fatty acid binding protein, muscle and heart (mammary-derived growth inhibitor) pseudogene and part of the AKT3 gene for v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma), complete sequence Length = 127036 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 152 ttactatttctccaaacaa 170 ||||||||||||||||||| Sbjct: 60998 ttactatttctccaaacaa 61016
>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold Length = 1819346 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 gggtcgtcagcaagttcag 56 ||||||||||||||||||| Sbjct: 1119285 gggtcgtcagcaagttcag 1119303
>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5) Length = 893329 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 aagaactggaagcgctgtt 153 ||||||||||||||||||| Sbjct: 101017 aagaactggaagcgctgtt 100999
>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete sequence Length = 190964 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 atccaaccagcacaaatag 125 ||||||||||||||||||| Sbjct: 58363 atccaaccagcacaaatag 58345 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,417,454 Number of Sequences: 3902068 Number of extensions: 1417454 Number of successful extensions: 89228 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89170 Number of HSP's gapped (non-prelim): 58 length of query: 194 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 172 effective length of database: 17,147,199,772 effective search space: 2949318360784 effective search space used: 2949318360784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)