>RAD54_SCHPO (P41410) DNA repair protein rhp54 (EC 3.6.1.-) (RAD54 homolog 1)|
          Length = 852

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 105 IAQVTTLQHMI*TASRKQTALLEFMHGEPGKTFKTPKAPCII 230
           I Q TT +  I T+S+  T L +     PGK FK  K P ++
Sbjct: 2   IQQPTTAKPRISTSSKLNTVLSKNKENVPGKLFKKFKCPSLV 43

>Y2986_OCEIH (Q8EM72) UPF0340 protein OB2986|
          Length = 181

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 193 GKHLKHPKHPVSFVKPFMTYVSAEVKAATTDP 288
           G HLKH   P+ F + F+ Y  A V+AA T P
Sbjct: 140 GMHLKHVAVPLKFKQRFINY--ARVRAARTRP 169

>SEN22_ARATH (Q9LSS3) tRNA-splicing endonuclease subunit Sen2-2 (EC 3.1.27.9)|
           (AtSen2) (tRNA-intron endonuclease Sen2-2)
          Length = 250

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 167 QRSLLSTCSLNHMLQCCNLSNKLINFPLEQLFFVSFNK*CMKHLLA*GCL 18
           Q  LL  C    ++       K I    E+ FF+ +N  C+K  L   CL
Sbjct: 52  QAELLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCL 101

>PHPA_PLACH (Q02752) Acidic phosphoprotein precursor (50 kDa antigen)|
          Length = 441

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 308 SVAFGTTGSVVAALTSADT*VMNGFTNDTGCFGCFKCFP 192
           +++ G   S++ ++  A     +G  + TGCFGCF+  P
Sbjct: 3   AISLGLISSIIFSIVLAKN--SSGSGSSTGCFGCFRKKP 39

>NAPA_PASMU (Q9CKL8) Periplasmic nitrate reductase precursor (EC 1.7.99.4)|
          Length = 828

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 177 MHGEPGKTFKTPKAPCIICETIHDLCVGRSQGR 275
           +   P K  K  KAPC  C T   + VG   GR
Sbjct: 30  VEASPDKIIKWDKAPCRFCGTGCSVLVGTQNGR 62

>UBP2_HUMAN (O75604) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 2)
           (Ubiquitin-specific-processing protease 2)
           (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific
           protease)
          Length = 605

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = -2

Query: 164 RSLLSTCSLNHMLQCCNLSNKLINFPLEQLF 72
           R+L +TC +N +LQC + + +L ++ L++L+
Sbjct: 270 RNLGNTCFMNSILQCLSNTRELRDYCLQRLY 300

>SKN1_CAEEL (P34707) Protein skinhead-1|
          Length = 623

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = -2

Query: 293 TTGSVVAALTSADT*----VMNGFTNDTGCFGCFKCFPWFTMHKF*QRSLLSTCSLNHML 126
           T  S VA LT+ +      +  GF N  G F  F    +   H+  QR  + T +L H  
Sbjct: 225 TEKSTVAPLTAEENARYEDLSKGFYN--GFFESFNNNQYQQKHQQQQREQIKTPTLEHPT 282

Query: 125 QCCNLSNKLINFPLEQLF 72
           Q   L + L +  L QLF
Sbjct: 283 QKAELEDDLFDEDLAQLF 300

>UBP2_MOUSE (O88623) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 2)
           (Ubiquitin-specific-processing protease 2)
           (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific
           protease)
          Length = 353

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = -2

Query: 164 RSLLSTCSLNHMLQCCNLSNKLINFPLEQLF 72
           R+L +TC +N +LQC + + +L ++ L++L+
Sbjct: 18  RNLGNTCFMNSILQCLSNTRELRDYCLQRLY 48

>B915_XENLA (P40745) Maternal B9.15 protein (P30 B9.15)|
          Length = 233

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 39  MFHTLFVKAYKKQLFQWKINKFIAQVTTL 125
           +F T+ VK +K QL + KI KF A++TTL
Sbjct: 10  VFLTMLVKKHK-QLSKQKIEKFAAKLTTL 37

>DCN1_CANGA (Q6FJR2) Defective in cullin neddylation protein 1|
          Length = 273

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 155 LSTCSLNHMLQCCNLSNKLINFPLEQLFFVSFNK*C-----MKHLL 33
           L T SL H LQC NL N +     +Q  +  +N+ C     M+H L
Sbjct: 105 LVTISLAHFLQCKNLENPITE---KQFLYFWYNEGCYTLEQMRHYL 147

>OXAA2_LACPL (Q88WR8) Membrane protein oxaA 2 precursor|
          Length = 307

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 181 MVNQGKHLKHPKHPVSFVKPFMTYVSAEVKAATT 282
           M+NQ +   + +  +S V+P M  + A  KAATT
Sbjct: 78  MINQQRKSTYQQEKMSAVRPQMEKIQARQKAATT 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,930,020
Number of Sequences: 219361
Number of extensions: 761020
Number of successful extensions: 1551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)