ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56b05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC158969.5| Mus musculus chromosome 1, clone RP23-264G9, complete sequence Length = 216914 Score = 44.1 bits (22), Expect = 0.090 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ataaaatgactttgacaaaatt 90 |||||||||||||||||||||| Sbjct: 164644 ataaaatgactttgacaaaatt 164623
>gb|AC130534.5| Mus musculus BAC clone RP23-216A12 from 1, complete sequence Length = 198268 Score = 44.1 bits (22), Expect = 0.090 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ataaaatgactttgacaaaatt 90 |||||||||||||||||||||| Sbjct: 150321 ataaaatgactttgacaaaatt 150300
>emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chromosome 6, complete sequence Length = 100426 Score = 42.1 bits (21), Expect = 0.35 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 atttctactttttctatcaaa 108 ||||||||||||||||||||| Sbjct: 77454 atttctactttttctatcaaa 77474
>gb|AC109811.4| Homo sapiens BAC clone RP13-539F13 from 4, complete sequence Length = 93967 Score = 42.1 bits (21), Expect = 0.35 Identities = 30/33 (90%) Strand = Plus / Plus Query: 72 aaatgactttgacaaaatttctactttttctat 104 |||||||||||||||||| |||| |||||||| Sbjct: 77104 aaatgactttgacaaaatagctacattttctat 77136
>gb|AC148006.4| Mus musculus BAC clone RP23-298P21 from chromosome 19, complete sequence Length = 209327 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 taaaatgactttgacaaaat 89 |||||||||||||||||||| Sbjct: 204736 taaaatgactttgacaaaat 204755
>gb|AC122499.4| Mus musculus BAC clone RP24-407O20 from chromosome 9, complete sequence Length = 186516 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tttctactttttctatcaaa 108 |||||||||||||||||||| Sbjct: 7997 tttctactttttctatcaaa 7978
>emb|CR352327.13| Zebrafish DNA sequence from clone CH211-194C22 in linkage group 8, complete sequence Length = 203325 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cattcaaaagggtttttaag 37 |||||||||||||||||||| Sbjct: 20078 cattcaaaagggtttttaag 20097
>gb|AC003989.1| Homo sapiens BAC clone CTB-7J15 from 7, complete sequence Length = 118103 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acagcatcaacaaacattca 23 |||||||||||||||||||| Sbjct: 16233 acagcatcaacaaacattca 16252
>gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, complete sequence Length = 236661 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 taaaatgactttgacaaaat 89 |||||||||||||||||||| Sbjct: 78287 taaaatgactttgacaaaat 78268
>gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, complete sequence Length = 181138 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acagcatcaacaaacattca 23 |||||||||||||||||||| Sbjct: 150105 acagcatcaacaaacattca 150124
>gb|AC159100.2| Mus musculus BAC clone RP24-248F9 from chromosome 9, complete sequence Length = 161485 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tttctactttttctatcaaa 108 |||||||||||||||||||| Sbjct: 37508 tttctactttttctatcaaa 37527
>emb|AL603648.3| Human DNA sequence from clone RP11-352K16 on chromosome 6, complete sequence Length = 53569 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaatgactttgacaaaatt 90 |||||||||||||||||||| Sbjct: 24050 aaaatgactttgacaaaatt 24069
>emb|AL157768.6| Human DNA sequence from clone RP11-481A22 on chromosome 13, complete sequence Length = 145603 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 caaaatttctactttttcta 103 |||||||||||||||||||| Sbjct: 119456 caaaatttctactttttcta 119437
>emb|BX572090.1| Prochlorococcus marinus MED4 complete genome; segment 1/5 Length = 349742 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aaaagggtttttaagggtat 42 |||||||||||||||||||| Sbjct: 326518 aaaagggtttttaagggtat 326537
>emb|AL935153.19| Zebrafish DNA sequence from clone CH211-226F24 in linkage group 8, complete sequence Length = 173789 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cattcaaaagggtttttaag 37 |||||||||||||||||||| Sbjct: 23376 cattcaaaagggtttttaag 23395
>dbj|AP002370.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-160H12, complete sequence Length = 174697 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ctttttctatcaaaaggccc 114 |||||||||||||||||||| Sbjct: 121716 ctttttctatcaaaaggccc 121735
>dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-682K9, complete sequence Length = 197847 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ctttttctatcaaaaggccc 114 |||||||||||||||||||| Sbjct: 42746 ctttttctatcaaaaggccc 42765
>emb|AL732568.8| Mouse DNA sequence from clone RP23-469G19 on chromosome 4, complete sequence Length = 169474 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaaatgactttgacaaaatt 90 |||||||||||||||||||| Sbjct: 37462 aaaatgactttgacaaaatt 37443
>gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, complete sequence Length = 222061 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 taaaatgactttgacaaaat 89 |||||||||||||||||||| Sbjct: 9453 taaaatgactttgacaaaat 9472
>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005H20, complete sequence Length = 135560 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 ttttctatcaaaaggccca 115 ||||||||||||||||||| Sbjct: 73394 ttttctatcaaaaggccca 73376
>gb|AC146514.4| Pan troglodytes BAC clone CH251-103N3 from Y, complete sequence Length = 194348 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 tgacaaaatttctactttt 99 ||||||||||||||||||| Sbjct: 71773 tgacaaaatttctactttt 71755
>gb|AC147345.2| Pan troglodytes BAC clone CH251-8K7 from Y, complete sequence Length = 230714 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 tgacaaaatttctactttt 99 ||||||||||||||||||| Sbjct: 201512 tgacaaaatttctactttt 201494
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 ttttctatcaaaaggccca 115 ||||||||||||||||||| Sbjct: 29412576 ttttctatcaaaaggccca 29412594
>gb|AC123826.4| Mus musculus BAC clone RP24-97K3 from chromosome 8, complete sequence Length = 188704 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aaaatgactttgacaaaat 89 ||||||||||||||||||| Sbjct: 144712 aaaatgactttgacaaaat 144730
>gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complete sequence Length = 235915 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aaaatgactttgacaaaat 89 ||||||||||||||||||| Sbjct: 10168 aaaatgactttgacaaaat 10186
>emb|AJ245480.1|BNA245480 Brassica napus subsp. napus AtPP-A14 gene for putative S-adenosyl methionine salycilic acid carboxyl methionyl transferase and slg gene for S-locus glycoprotein, cultivar T2 Length = 87844 Score = 38.2 bits (19), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 atttctactttttctatcaaaag 110 ||||||||||||| ||||||||| Sbjct: 76477 atttctactttttatatcaaaag 76499
>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence Length = 175569 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 gacaaaatttctacttttt 100 ||||||||||||||||||| Sbjct: 71528 gacaaaatttctacttttt 71546
>emb|AL731566.7| Human DNA sequence from clone RP11-500G22 on chromosome 10 Contains the 5' end of the ATE1 gene for arginyltransferase 1, a novel gene, the gene for a novel protein (FLJ20003), the 5' end of the TACC2 gene for transforming, acidic coiled-coil containing protein 2 (AZU-1) and three CpG islands, complete sequence Length = 125922 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 atcaacaaacattcaaaag 27 ||||||||||||||||||| Sbjct: 49502 atcaacaaacattcaaaag 49520
>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the 3' end of a novel gene and apolipoprotein L 3 (APOL3) pseudogene, complete sequence Length = 172898 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 caaaatttctactttttct 102 ||||||||||||||||||| Sbjct: 37121 caaaatttctactttttct 37103
>emb|AL356454.15| Human DNA sequence from clone RP11-458J24 on chromosome 6, complete sequence Length = 174333 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 atataaaatgactttgaca 85 ||||||||||||||||||| Sbjct: 54442 atataaaatgactttgaca 54424
>emb|AL356100.8| Human DNA sequence from clone RP11-359H22 on chromosome 10 Contains part of a novel gene (KIAA0534), complete sequence Length = 190361 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 tttctactttttctatcaa 107 ||||||||||||||||||| Sbjct: 115967 tttctactttttctatcaa 115985
>emb|AL353646.9| Human DNA sequence from clone RP11-186A13 on chromosome 13, complete sequence Length = 49820 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 tctactttttctatcaaaa 109 ||||||||||||||||||| Sbjct: 19606 tctactttttctatcaaaa 19588
>gb|AY051318.3| Penaeus semisulcatus vitellogenin VTG mRNA, complete cds Length = 7920 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atcgaacatcatctatgct 59 ||||||||||||||||||| Sbjct: 1946 atcgaacatcatctatgct 1964
>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete sequence Length = 194230 Score = 38.2 bits (19), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 atataaaatgactttgacaaaat 89 ||||||||||||||| ||||||| Sbjct: 5910 atataaaatgactttaacaaaat 5932
>emb|AL596096.7| Mouse DNA sequence from clone RP23-42P20 on chromosome 11 Contains the 5' end of the Alox12e gene for epidermal arachidonate lipoxygenase, the gene for arachidonate 15-lipoxygenase, a novel pseudogene, two genes for novel proteins (4930563C04Rik, 1110030J09Rik), a Mitochondrial 28S ribosomal protein pseudogene, a NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 (Ndufb8) pseudogene, the gene for a novel protein similar to Beta-arrestin 2 (Arrestin, beta 2) (LOC216869), the Cxcl16 gene for chemokine (C-X-C motif) ligand 16, the gene for a novel protein similar to human zinc finger MYND domain containg 15 (ZMYND15), the 5' end of the gene for a novel protein (2010003F10Rik) and three CpG islands, complete sequence Length = 193277 Score = 38.2 bits (19), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 atataaaatgactttgacaaaat 89 ||||||||||||||| ||||||| Sbjct: 166553 atataaaatgactttaacaaaat 166575
>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a component of oligomeric golgi complex 1 (Cog5) pseudogene and part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 198523 Score = 38.2 bits (19), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 66 catataaaatgactttgacaaaa 88 ||||||||| ||||||||||||| Sbjct: 188995 catataaaaagactttgacaaaa 189017
>gb|AC048351.18| Homo sapiens 3 BAC RP11-175P19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161687 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 ttctactttttctatcaaa 108 ||||||||||||||||||| Sbjct: 158043 ttctactttttctatcaaa 158025
>gb|AF263284.4| Homo sapiens chromosome 8 clone GS1-9J2 map 8q11-q13, complete sequence Length = 99592 Score = 38.2 bits (19), Expect = 5.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 64 agcatataaaatgactttgacaaaatt 90 ||||||||||| | ||||||||||||| Sbjct: 49389 agcatataaaaggcctttgacaaaatt 49415
>dbj|BS000647.3| Pan troglodytes chromosome Y clone: PTBY-005A21, complete sequence Length = 106685 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 tgacaaaatttctactttt 99 ||||||||||||||||||| Sbjct: 52644 tgacaaaatttctactttt 52626
>gb|DQ339444.1| HIV-1 isolate 04JJW2-1458:HP-2 from South Korea vpu protein gene, complete cds; and envelope glycoprotein gene, partial cds Length = 1574 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 atttctactttttctatca 106 ||||||||||||||||||| Sbjct: 648 atttctactttttctatca 630
>dbj|AB190354.1| Brassica rapa BrSRK-f2, BrSP11-f2 genes, complete cds Length = 38542 Score = 38.2 bits (19), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 atttctactttttctatcaaaag 110 ||||||||||||| ||||||||| Sbjct: 10624 atttctactttttatatcaaaag 10602
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 tgacaaaatttctactttt 99 ||||||||||||||||||| Sbjct: 18172497 tgacaaaatttctactttt 18172515
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence Length = 93868 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 catcaacaaacattcaaaa 26 ||||||||||||||||||| Sbjct: 93319 catcaacaaacattcaaaa 93301
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete sequence Length = 97814 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 catcaacaaacattcaaaa 26 ||||||||||||||||||| Sbjct: 288 catcaacaaacattcaaaa 270
>gb|AY499620.2| Fenneropenaeus merguiensis vitellogenin mRNA, complete cds Length = 7961 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atcgaacatcatctatgct 59 ||||||||||||||||||| Sbjct: 1947 atcgaacatcatctatgct 1965
>gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, complete sequence Length = 187204 Score = 38.2 bits (19), Expect = 5.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 64 agcatataaaatgactttgacaaaatt 90 ||||||||||| | ||||||||||||| Sbjct: 130371 agcatataaaaggcctttgacaaaatt 130397
>gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, complete sequence Length = 168575 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 aatttctactttttctatc 105 ||||||||||||||||||| Sbjct: 48472 aatttctactttttctatc 48490
>dbj|AK035627.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530078I05 product:unclassifiable, full insert sequence Length = 1551 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aaaatgactttgacaaaat 89 ||||||||||||||||||| Sbjct: 1038 aaaatgactttgacaaaat 1020
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 ttttctatcaaaaggccca 115 ||||||||||||||||||| Sbjct: 29503998 ttttctatcaaaaggccca 29504016
>gb|DQ288843.1| Penaeus monodon vitellogenin mRNA, complete cds Length = 7948 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atcgaacatcatctatgct 59 ||||||||||||||||||| Sbjct: 1945 atcgaacatcatctatgct 1963
>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence Length = 155710 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 aaaatttctactttttcta 103 ||||||||||||||||||| Sbjct: 15283 aaaatttctactttttcta 15301
>gb|AC005820.1|AC005820 Homo sapiens chromosome Y, clone hCIT.494_G_17, complete sequence Length = 223725 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 tgacaaaatttctactttt 99 ||||||||||||||||||| Sbjct: 206294 tgacaaaatttctactttt 206276
>emb|BX005473.5| Zebrafish DNA sequence from clone DKEY-148P7 in linkage group 1, complete sequence Length = 94966 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 aaatgactttgacaaaatt 90 ||||||||||||||||||| Sbjct: 9601 aaatgactttgacaaaatt 9583
>dbj|AK105262.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B11, full insert sequence Length = 2263 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 ttttctatcaaaaggccca 115 ||||||||||||||||||| Sbjct: 1708 ttttctatcaaaaggccca 1690
>emb|CR626902.14| Zebrafish DNA sequence from clone CH211-1F22 in linkage group 1, complete sequence Length = 130900 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aaaatgactttgacaaaat 89 ||||||||||||||||||| Sbjct: 70725 aaaatgactttgacaaaat 70743
>gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, complete sequence Length = 155730 Score = 38.2 bits (19), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 69 ataaaatgactttgacaaaattt 91 |||||||| |||||||||||||| Sbjct: 153924 ataaaatgtctttgacaaaattt 153946
>gb|AC171179.2| Gallus gallus BAC clone CH261-31A13 from chromosome ul, complete sequence Length = 247380 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 tttctactttttctatcaa 107 ||||||||||||||||||| Sbjct: 212622 tttctactttttctatcaa 212604
>gb|AC006442.1|AC006442 Homo sapiens, clone hRPK.7_A_1, complete sequence Length = 155935 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 tctactttttctatcaaaa 109 ||||||||||||||||||| Sbjct: 1617 tctactttttctatcaaaa 1635
>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence Length = 197641 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 catcatctatgctgctaag 65 ||||||||||||||||||| Sbjct: 92769 catcatctatgctgctaag 92751
>emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in linkage group 5, complete sequence Length = 227454 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 caaaagggtttttaagggt 40 ||||||||||||||||||| Sbjct: 157683 caaaagggtttttaagggt 157701
>gb|AC161533.22| Mus musculus chromosome 3, clone RP23-55N2, complete sequence Length = 158774 Score = 38.2 bits (19), Expect = 5.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aaaatgactttgacaaaat 89 ||||||||||||||||||| Sbjct: 50134 aaaatgactttgacaaaat 50116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,602,822 Number of Sequences: 3902068 Number of extensions: 1602822 Number of successful extensions: 142955 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142627 Number of HSP's gapped (non-prelim): 328 length of query: 120 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 99 effective length of database: 17,151,101,840 effective search space: 1697959082160 effective search space used: 1697959082160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
