>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
           hydrolase)
          Length = 863

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 26/58 (44%), Positives = 37/58 (63%)
 Frame = -3

Query: 337 VLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 164
           +L++D  NP  A+R+V     WRRY      L +AQLE I++   LS+NV E+ASK+L
Sbjct: 805 ILKVDAFNPMTAARLVEPLGGWRRYKPELGDLMRAQLERIVAHPNLSKNVLELASKAL 862

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
           hydrolase)
          Length = 869

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 22/59 (37%), Positives = 38/59 (64%)
 Frame = -3

Query: 340 VVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 164
           V+++L++ NPQVA+R++    R+ R+D  RQ L K  LE +     LS++++E   K+L
Sbjct: 810 VLIRLNESNPQVAARLIEPLIRFSRFDAQRQTLMKRALERLSVVENLSKDLFEKIEKAL 868

>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
           hydrolase)
          Length = 869

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 36/60 (60%)
 Frame = -3

Query: 340 VVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSLA 161
           ++  L+  NPQVASR++    R +RYD  RQ   +A LE +     LS ++YE  +K+LA
Sbjct: 810 MLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA 869

>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 340  VVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYE 182
            V+ + DK NP VA+++   F  W + D  RQ L   ++  ++    +S N+ E
Sbjct: 1024 VITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPNISNNLKE 1076

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
            2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 25   TIVACYFTHAKYSRIYSVKYTFRALVMVKGSTGRIKFVSLHQETKLPDFSRLSHRHF 195
            T + CY     +  ++   +T  A V V     R +FV LH E  L D SR   + F
Sbjct: 1135 TALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 1191

>SF3B5_DROME (Q9VHI4) Probable splicing factor 3B subunit 5 (SF3b5)|
           (Pre-mRNA-splicing factor SF3b 10 kDa subunit)
          Length = 85

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 274 IERMLTPCGMPPEDL 318
           +ERML PCG PPE L
Sbjct: 69  MERMLQPCGPPPEKL 83

>YPDC_ECOLI (P77396) Putative HTH-type transcriptional regulator ypdC|
          Length = 285

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 187 RHFQRVHWLR*SSPTGP*QELVSSRHISSIERMLTPCGMPPEDLFCRAVKQ 339
           R  + V W+R +        ++  ++  SI  +   CG P  D FCR  ++
Sbjct: 225 RFIEYVRWVRMAKA-----RMILQKYHLSIHEVAQRCGFPDSDYFCRVFRR 270

>SYY_HELPY (P56417) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 402

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = -3

Query: 319 INPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSLAA*FPDAK 140
           +   +AS +V+     R YD  +   AK Q   + SAN L E + E +         D  
Sbjct: 294 VKEDLASEIVA-----RYYDNDQAIKAKEQFSKVFSANLLPEILSE-SDFDEGVGILDVL 347

Query: 139 KQI*FCQST 113
           KQI FC ST
Sbjct: 348 KQIGFCPST 356

>SF3BB_ARATH (P58728) Protein At4g14342|
          Length = 87

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 244 ELVSSRHISSIERMLTPCGMPPE 312
           E +     + +++ML PCG+PPE
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPE 83

>SF3BA_ARATH (Q9LW64) Protein At3g23325|
          Length = 87

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 244 ELVSSRHISSIERMLTPCGMPPE 312
           E +     + +++ML PCG+PPE
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPE 83

>SYY_HELPJ (Q9ZL69) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 402

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = -3

Query: 319 INPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSLAA*FPDAK 140
           +   +AS +V+     R YD  +   AK Q   + SAN L E + E +         D  
Sbjct: 294 VKEDLASEIVA-----RYYDNDQAFKAKEQFSKVFSANLLPEILLE-SDFDEGVGVLDVL 347

Query: 139 KQI*FCQST 113
           KQI FC ST
Sbjct: 348 KQIGFCPST 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,288,403
Number of Sequences: 219361
Number of extensions: 831709
Number of successful extensions: 1924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)