ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA 178 8e-42
2dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 8e-42
3dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 8e-42
4gb|AY105426.1| Zea mays PCO146438 mRNA sequence 131 2e-27
5gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence 127 3e-26
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
7dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
8ref|XM_715357.1| Candida albicans SC5314 ubiquitin-protein ligas... 40 4.5
9ref|XM_715127.1| Candida albicans SC5314 ubiquitin-protein ligas... 40 4.5
10emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 i... 40 4.5
11gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complet... 40 4.5
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
13gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, compl... 40 4.5
14gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) gen... 40 4.5
15dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
16emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-3... 40 4.5 
>ref|XM_483801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3145

 Score =  178 bits (90), Expect = 8e-42
 Identities = 162/186 (87%)
 Strand = Plus / Minus

                                                                        
Query: 157  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848

                                                                        
Query: 217  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 276
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2788

                                                                        
Query: 277  gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 336
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 2787 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2728

                  
Query: 337  caactt 342
            ||||||
Sbjct: 2727 caactt 2722
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>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full
            insert sequence
          Length = 2519

 Score =  178 bits (90), Expect = 8e-42
 Identities = 162/186 (87%)
 Strand = Plus / Minus

                                                                        
Query: 157  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266

                                                                        
Query: 217  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 276
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2206

                                                                        
Query: 277  gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 336
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 2205 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2146

                  
Query: 337  caactt 342
            ||||||
Sbjct: 2145 caactt 2140
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>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full
            insert sequence
          Length = 3181

 Score =  178 bits (90), Expect = 8e-42
 Identities = 162/186 (87%)
 Strand = Plus / Minus

                                                                        
Query: 157  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884

                                                                        
Query: 217  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 276
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2824

                                                                        
Query: 277  gagagaatgctgacaccatgcgggatgccacctgaggatttattttgtcgagctgtaaaa 336
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 2823 gagagaaagctgacaccatgcgggaggccacctgaggatttatcttgtctagctgtaaaa 2764

                  
Query: 337  caactt 342
            ||||||
Sbjct: 2763 caactt 2758
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>gb|AY105426.1| Zea mays PCO146438 mRNA sequence
          Length = 3165

 Score =  131 bits (66), Expect = 2e-27
 Identities = 126/146 (86%)
 Strand = Plus / Minus

                                                                        
Query: 192  ttttcagagagtccattggctgagataatcatctccaactgggccttagcaagagcttgt 251
            ||||| ||||| |||||||| || |  |||||||||| ||||||||||||||||||||||
Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922

                                                                        
Query: 252  ctcgtctcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctga 311
            || |||| ||| || | |||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 2921 ctggtcttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctga 2862

                                      
Query: 312  ggatttattttgtcgagctgtaaaac 337
            || ||||| ||||| ||||| |||||
Sbjct: 2861 gggtttatcttgtcaagctgcaaaac 2836
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>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence
          Length = 2068

 Score =  127 bits (64), Expect = 3e-26
 Identities = 121/140 (86%)
 Strand = Plus / Minus

                                                                        
Query: 198  gagagtccattggctgagataatcatctccaactgggccttagcaagagcttgtctcgtc 257
            ||||| |||||||| || |  |||||||||| |||||||||||||||||||||||| |||
Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790

                                                                        
Query: 258  tcgtcatatctcctccatcgagagaatgctgacaccatgcgggatgccacctgaggattt 317
            | ||| || | |||||| ||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct: 1789 ttgtcgtaccgcctccaccgagaaaatgctgaaaccatgcgggaggccacctgagggttt 1730

                                
Query: 318  attttgtcgagctgtaaaac 337
            || ||||| ||||| |||||
Sbjct: 1729 atcttgtcaagctgcaaaac 1710
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                            
Query: 235      ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 294
                |||||||||||||||||||  |||| ||||||| |||||| |||||||| ||||||||||
Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 28166554

                               
Query: 295      tgcgggatgccacct 309
                ||||||| |||||||
Sbjct: 28166555 tgcgggaggccacct 28166569



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 306      acctgaggatttattttgtcgagctgtaaaacaactt 342
                |||||||||||||| ||||| ||||||||||||||||
Sbjct: 28166653 acctgaggatttatcttgtctagctgtaaaacaactt 28166689



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                            
Query: 157      aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
                |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 28166340 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 28166399

                                     
Query: 217      taatcatctccaactgggcct 237
                  |||||||||| ||| ||||
Sbjct: 28166400 cgatcatctccagctgagcct 28166420
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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                         
Query: 235   ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgagagaatgctgacacca 294
             |||||||||||||||||||  |||| ||||||| |||||| |||||||| ||||||||||
Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgagagaaagctgacacca 50027

                            
Query: 295   tgcgggatgccacct 309
             ||||||| |||||||
Sbjct: 50028 tgcgggaggccacct 50042



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 306   acctgaggatttattttgtcgagctgtaaaacaactt 342
             |||||||||||||| ||||| ||||||||||||||||
Sbjct: 50126 acctgaggatttatcttgtctagctgtaaaacaactt 50162



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 157   aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 216
             |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 49813 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 49872

                                  
Query: 217   taatcatctccaactgggcct 237
               |||||||||| ||| ||||
Sbjct: 49873 cgatcatctccagctgagcct 49893
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>ref|XM_715357.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_2697), mRNA
          Length = 5697

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 311  aggatttattttgtcgagct 330
            ||||||||||||||||||||
Sbjct: 1094 aggatttattttgtcgagct 1113
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>ref|XM_715127.1| Candida albicans SC5314 ubiquitin-protein ligase (CaO19_10212), mRNA
          Length = 5697

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 311  aggatttattttgtcgagct 330
            ||||||||||||||||||||
Sbjct: 1094 aggatttattttgtcgagct 1113
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>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5,
            complete sequence
          Length = 182066

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  tggcagaatcaaatttgttt 139
            ||||||||||||||||||||
Sbjct: 9480 tggcagaatcaaatttgttt 9461
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>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence
          Length = 121737

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    taaatacagcagaatatatt 73
             ||||||||||||||||||||
Sbjct: 89696 taaatacagcagaatatatt 89677
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       ccactatagtagcctgttat 42
                ||||||||||||||||||||
Sbjct: 16754860 ccactatagtagcctgttat 16754841
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>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence
          Length = 156582

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    taaatacagcagaatatatt 73
             ||||||||||||||||||||
Sbjct: 45601 taaatacagcagaatatatt 45620
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>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence
          Length = 43180

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 53    ctaaatacagcagaatatattcagttaa 80
             |||||| |||||||||||||||| ||||
Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737
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>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664F03
          Length = 184242

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ccactatagtagcctgttat 42
              ||||||||||||||||||||
Sbjct: 106347 ccactatagtagcctgttat 106328
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>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176833

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   agacattttcagagagtcca 206
             ||||||||||||||||||||
Sbjct: 33908 agacattttcagagagtcca 33927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,266,941
Number of Sequences: 3902068
Number of extensions: 3266941
Number of successful extensions: 73554
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73504
Number of HSP's gapped (non-prelim): 50
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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