ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ISP4_SCHPO (P40900) Sexual differentiation process protein isp4 29 2.5

>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4|
          Length = 785

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = +1

Query: 70  YKS*RILTISTSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGVDVITSMQKAL 249
           Y++   + +ST+ A  F L ++ I S  + +I+    ++  ++       D+   + KA 
Sbjct: 400 YQNYSPIFMSTTYALAFGLSFASITSVIFHVILYHGKEI-YDRLRDPPAPDIHEKLMKAY 458

Query: 250 NGVFWYIYYSTVHNRIMGYLSGSK*SWRNETP 345
           + V +Y +Y +V     G + G+   W+ ETP
Sbjct: 459 DEVPFY-WYLSVFLAFFGMMMGTIYGWKTETP 489


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,859,443
Number of Sequences: 219361
Number of extensions: 900217
Number of successful extensions: 1743
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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