>US02_HHV2H (P13292) Protein US2|
          Length = 290

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
 Frame = -2

Query: 311 RRMPAPLKEISKFTAPCWEKRRCKIMP----------APLEEIDI 207
           RR+  PL ++ KFT P    R C+  P           PLE I+I
Sbjct: 56  RRLAEPLMDLPKFTRPIVRTRSCRCPPNTTTGLFAEDDPLESIEI 100

>ZMYM3_MOUSE (Q9JLM4) Zinc finger MYM-type protein 3 (Zinc finger protein 261)|
           (DXHXS6673E protein)
          Length = 1370

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
 Frame = +2

Query: 47  TLMCSESNVYVY------------NTGQQKR*VNTTFEERHGKK-TRLKQQTWAKTWLHL 187
           T  C +   Y+Y            + GQQKR  NTT    + KK TR+    W KT    
Sbjct: 450 TNCCDQCGAYIYARPGGLGPELLFHDGQQKRFCNTTCLGAYKKKNTRVYPCVWCKTLCKN 509

Query: 188 AKL*ELGYLSPQGEQALSC 244
            ++  L ++   G+ +L C
Sbjct: 510 FEM--LSHVDRNGKTSLFC 526

>ZMYM3_HUMAN (Q14202) Zinc finger MYM-type protein 3 (Zinc finger protein 261)|
           (DXS6673E protein)
          Length = 1370

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
 Frame = +2

Query: 47  TLMCSESNVYVY------------NTGQQKR*VNTTFEERHGKK-TRLKQQTWAKTWLHL 187
           T  C +   Y+Y            + GQQKR  NTT    + KK TR+    W KT    
Sbjct: 448 TNCCDQCGAYIYTKTGSPGPELLFHEGQQKRFCNTTCLGAYKKKNTRVYPCVWCKTLCKN 507

Query: 188 AKL*ELGYLSPQGEQALSC 244
            ++  L ++   G+ +L C
Sbjct: 508 FEM--LSHVDRNGKTSLFC 524

>ARP_ARATH (P45951) Apurinic endonuclease-redox protein (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
          Length = 536

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = +2

Query: 2   WRRNLQ--IKQMEQSKITLM-----CSESNVYVYNTGQQKR*VNTTFEERHGKKTRLKQQ 160
           W R L   IK++E+SK  ++     C+   + ++N    KR    T EER      L  +
Sbjct: 407 WDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDK 466

Query: 161 TWAKTW 178
            +  T+
Sbjct: 467 GFVDTF 472

>SIAE_PONPY (Q5RFU0) Sialate O-acetylesterase precursor (EC 3.1.1.53) (Sialic|
           acid-specific 9-O-acetylesterase)
          Length = 523

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 290 KEISKFTAPCWEKRRCKIMPAPLEEIDIQALIALLD 183
           K+   F   C   RRCK +PA +  +  Q+L   +D
Sbjct: 434 KDNKIFEISCCSDRRCKWLPASMSTVSTQSLTLAID 469

>SOX3_MOUSE (P53784) Transcription factor SOX-3|
          Length = 375

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -3

Query: 280 PSSPPPAGRREDAR*CLLPLRR*IS 206
           PSSPPPA R    R CL  LR  IS
Sbjct: 307 PSSPPPAIRSHSQRACLGDLRDMIS 331

>LIM_HALRO (Q25132) LIM/homeobox protein LIM (HRLIM)|
          Length = 514

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 86  TGQQKR*VNTTFEERHGKKTRLKQQTWAKTWLH 184
           TG   R V   F+ R  K+ R+K+ T  + W H
Sbjct: 447 TGLDMRVVQVWFQNRRAKEKRIKRDTGRQRWGH 479

>IL19_MOUSE (Q8CJ70) Interleukin-19 precursor (IL-19)|
          Length = 176

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 142 LFAMSLLKCSVNLTLLLSCVIYVDVR 65
           L  M+L+ CSV++  L  C+I VD+R
Sbjct: 10  LLGMTLILCSVHIYSLRRCLISVDMR 35

>SIAE_MOUSE (P70665) Sialate O-acetylesterase precursor (EC 3.1.1.53) (Sialic|
           acid-specific 9-O-acetylesterase) (Yolk sac protein 2)
           [Contains: Sialate O-acetylesterase small subunit;
           Sialate O-acetylesterase large subunit]
          Length = 541

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 293 LKEISKFTAPCWEKRRCKIMPAPLEEIDIQALIALLDEAM 174
           +++   F   C   R CK +PAP+     Q LI  L+  +
Sbjct: 459 MQDNKTFEISCCSDRHCKWLPAPVNTFSTQTLILDLNACL 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,306,491
Number of Sequences: 219361
Number of extensions: 929298
Number of successful extensions: 2212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)