ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 44 0.27
2ref|XM_783299.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.2
3emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on ch... 40 4.2
4emb|BX927151.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 4.2
5emb|BX572623.8| Human DNA sequence from clone XXyac-22CH10 on ch... 40 4.2
6dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 4.2
7ref|XM_226891.3| PREDICTED: Rattus norvegicus dynein-like protei... 40 4.2
8emb|BX640519.2| Human DNA sequence from clone RP11-157L8 on chro... 40 4.2

>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 132     atggcaaaaagacacggctgaa 153
               ||||||||||||||||||||||
Sbjct: 1335333 atggcaaaaagacacggctgaa 1335354



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>ref|XM_783299.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4928-PB,
           isoform B (LOC583389), mRNA
          Length = 1464

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 153 agcagcaaacttgggccaaaacat 176
           ||||||| ||||||||||||||||
Sbjct: 199 agcagcagacttgggccaaaacat 222



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>emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on chromosome 13, complete
             sequence
          Length = 200059

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   gcttcatctagcaaagctat 197
             ||||||||||||||||||||
Sbjct: 72592 gcttcatctagcaaagctat 72611



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>emb|BX927151.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 4/10
          Length = 349459

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     cagatggaacagagcaagat 45
              ||||||||||||||||||||
Sbjct: 255828 cagatggaacagagcaagat 255847



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>emb|BX572623.8| Human DNA sequence from clone XXyac-22CH10 on chromosome 1, complete
             sequence
          Length = 112168

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ccagcagggggcggtgaact 277
             ||||||||||||||||||||
Sbjct: 35640 ccagcagggggcggtgaact 35621



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 26      cagatggaacagagcaagat 45
               ||||||||||||||||||||
Sbjct: 1300643 cagatggaacagagcaagat 1300662



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>ref|XM_226891.3| PREDICTED: Rattus norvegicus dynein-like protein 5 (DLP5), mRNA
          Length = 14246

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   gatcaaacagatggaacaga 38
            ||||||||||||||||||||
Sbjct: 998  gatcaaacagatggaacaga 1017



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>emb|BX640519.2| Human DNA sequence from clone RP11-157L8 on chromosome 1, complete
              sequence
          Length = 186829

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ccagcagggggcggtgaact 277
              ||||||||||||||||||||
Sbjct: 185263 ccagcagggggcggtgaact 185244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,324,815
Number of Sequences: 3902068
Number of extensions: 3324815
Number of successful extensions: 60165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60133
Number of HSP's gapped (non-prelim): 32
length of query: 318
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 296
effective length of database: 17,147,199,772
effective search space: 5075571132512
effective search space used: 5075571132512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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