Clone Information

BLAST Search Result

Clone Name	rbastl56a08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing famil...	33	0.17
2	E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)	31	0.64
3	ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1...	30	1.1
4	MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p...	30	1.9
5	BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless h...	30	1.9
6	YCX7_CHLRE (P36495) 232.2 kDa protein (ORF1995) (ORF-S) (ORFA)	30	1.9
7	MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p...	30	1.9
8	CDKL5_HUMAN (O76039) Cyclin-dependent kinase-like 5 (EC 2.7.11.2...	29	2.4
9	GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated ...	29	2.4
10	ENV_MLVRK (P31794) Env polyprotein precursor (Coat polyprotein) ...	29	3.2
11	ENV_MLVRD (P11268) Env polyprotein precursor (Coat polyprotein) ...	29	3.2
12	PROML_DROME (P82295) Prominin-like protein	29	3.2
13	HOMEZ_MOUSE (Q80W88) Homeobox and leucine zipper protein Homez (...	29	3.2
14	WBS14_MOUSE (Q99MZ3) Williams-Beuren syndrome chromosome region ...	29	3.2
15	SIR4_YEAST (P11978) Regulatory protein SIR4 (Silent information ...	29	3.2
16	RCOR2_XENLA (Q6NRZ0) REST corepressor 2	28	4.2
17	GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated ...	28	4.2
18	HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (...	28	4.2
19	BC11B_MOUSE (Q99PV8) B-cell lymphoma/leukemia 11B (B-cell CLL/ly...	28	4.2
20	HXD9A_BRARE (Q9PWM6) Homeobox protein Hox-D9a (Hox-D9)	28	4.2
21	BC11B_HUMAN (Q9C0K0) B-cell lymphoma/leukemia 11B (B-cell CLL/ly...	28	4.2
22	PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacema...	28	5.4
23	NR1D1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA-related...	28	5.4
24	HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)	28	5.4
25	SMG1_CAEEL (O01510) Serine/threonine-protein kinase smg-1 (EC 2....	28	5.4
26	HOMEZ_RAT (Q8K3E9) Homeobox and leucine zipper protein Homez (Ho...	28	5.4
27	RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif p...	28	5.4
28	WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family mem...	28	5.4
29	M3K11_HUMAN (Q16584) Mitogen-activated protein kinase kinase kin...	28	7.1
30	BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc...	28	7.1
31	GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein...	28	7.1
32	GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein...	28	7.1
33	GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein...	28	7.1
34	YMD5_CAEEL (P34459) Hypothetical protein F54H12.5	28	7.1
35	DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-re...	28	7.1
36	RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif p...	27	9.3
37	RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif p...	27	9.3
38	BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa...	27	9.3
39	SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr...	27	9.3
40	CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95	27	9.3
41	SI1L1_MOUSE (Q8C0T5) Signal-induced proliferation-associated 1-l...	27	9.3
42	GCNL2_HUMAN (Q92830) General control of amino acid synthesis pro...	27	9.3
43	SI1L1_RAT (O35412) Signal-induced proliferation-associated 1-lik...	27	9.3
44	LARG2_MOUSE (Q5XPT3) Glycosyltransferase-like protein LARGE2 (EC...	27	9.3
45	K1H8_HUMAN (O76015) Keratin, type I cuticular Ha8 (Hair keratin,...	27	9.3
46	K1949_PIG (Q767M0) Protein KIAA1949 homolog	27	9.3
47	DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like p...	27	9.3
48	HAP2_HAEIN (P45387) Adhesion and penetration protein precursor (...	27	9.3
49	CCNT1_PANTR (Q8HXN7) Cyclin-T1 (Cyclin-T) (CycT1)	27	9.3
50	REPA2_BUCAP (O85062) Probable replication-associated protein repA2	27	9.3
51	PUR6_CHICK (P38024) Multifunctional protein ADE2 [Includes: Phos...	27	9.3
52	LCP2_MOUSE (Q60787) Lymphocyte cytosolic protein 2 (SH2 domain-c...	27	9.3
53	CCNT1_HUMAN (O60563) Cyclin-T1 (Cyclin-T) (CycT1)	27	9.3

>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
 Frame = +2

Query: 95  GAWSKH-----YISSTESESNILLVLITRLHLDSFRWHTFLQGHT-----NHLPCVPTGI 244
           G+WS       Y+ ++E     +L L   L  ++ +WH  + G       + LP VP   
Sbjct: 651 GSWSSPRNTTPYLPTSEGHRERVLSLSQALATEASQWHRMMTGGNLDSQGDPLPGVPLPP 710

Query: 245 NGTAHRQLEQPRTPPLASYAPT 310
           +    ++   PR+PP+A+   T
Sbjct: 711 SDPTRQETPPPRSPPVANSGST 732

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>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = +2

Query: 200 LQGHTNHLPCVPT-----GINGTAHRQLEQPRTPPLASYAPTPTCPPLPTDWSAQQLQ 358
           L  H+   P  P      G      +Q +Q +TPPLA   P P  PP P     QQ Q
Sbjct: 232 LHHHSRSAPVSPVIARRGGAAAYMDQQYQQRQTPPLAPPPPPPPPPPPPPPPQQQQQQ 289

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>ATG26_CRYNE (Q5KK25) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
            (Autophagy-related protein 26)
          Length = 1585

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 158  ITRLHLDSFRWHTFLQGHTNHLPCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLP-T 334
            +T    D   W   + G  N       G++ T   ++EQ + P L +++PT   PPL  T
Sbjct: 1188 MTYTMFDQVFWRA-ISGQVNRWRRNVLGLDATTFDKMEQHKVPFLYNFSPTVVPPPLDWT 1246

Query: 335  DW 340
            +W
Sbjct: 1247 EW 1248

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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 194  TFLQGHTN--HLPCVP--TGINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
            T + GHT+   +P +P     +  AH  L  PR  P  +  P  TC P P
Sbjct: 3318 TVISGHTSPVRMPSLPGWQPNSAPAHLPLNPPRIQPPIAQLPIKTCTPAP 3367

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>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)|
          Length = 1426

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPTD 337
           P VP   +  + +      TPP+ + AP P  PP P D
Sbjct: 238 PPVPANQDQNSSQNTRLQPTPPIPAPAPKPAAPPRPLD 275

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>YCX7_CHLRE (P36495) 232.2 kDa protein (ORF1995) (ORF-S) (ORFA)|
          Length = 1995

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 110 HYISSTESESNILLVLITRLHLDSFRWHTFLQGHTNHLPCVPTGINGT 253
           H+++  E  +  +   +   H D+ RW+T++Q    H   + T I GT
Sbjct: 857 HFLTKNEERALHIRRFLLSEHYDTLRWYTYMQ----HYKTMKTNIGGT 900

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>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = +2

Query: 74   QPPIYGPGAWSKHYISSTESESNILLVLITRLHLDSFRWHT-FLQGHTN--HLPCVP--T 238
            QPP+  PGA      S T S+ N  +V     H    + HT  + GHT+   +P +P   
Sbjct: 3283 QPPLV-PGA-----TSLTMSQPNFPMVPQQLQH----QQHTAVISGHTSPARMPSLPGWQ 3332

Query: 239  GINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
              + +AH  L  PR  P  +     TC P P
Sbjct: 3333 SNSASAHLPLNPPRIQPPIAQLSLKTCTPAP 3363

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>CDKL5_HUMAN (O76039) Cyclin-dependent kinase-like 5 (EC 2.7.11.22)|
            (Serine/threonine-protein kinase 9)
          Length = 1030

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 218  HLPCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPL 328
            H PCVP   N   HR +  P   P+     T  CP L
Sbjct: 945  HTPCVP---NRALHRPISSPAPYPVLQVRGTSMCPTL 978

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>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)|
           (Oncogene GLI)
          Length = 1106

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +1

Query: 124 DRKRKQHTTSTNYTPTFGFLPLAYFSSRPYKPSTLRPYRNQWHGPQTARTTKNTAAS*LC 303
           DR + Q+ T +N  P    LP    + R   PS+LR +    HGP    T ++     L 
Sbjct: 347 DRAKHQNRTHSNEKPYVCKLPGC--TKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLP 404

Query: 304 PNSHLSSIADRLERTATP 357
               +S++  + ER   P
Sbjct: 405 RAPSISTVEPKREREGGP 422

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>ENV_MLVRK (P31794) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP76; Spike protein p15E; R protein]
          Length = 665

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 24/129 (18%)
 Frame = +2

Query: 17  SWTPESKVKWLEI--HT*SMQQPPIYGPGAWSKHYISSTESESNILLVLITRLHLDSFRW 190
           SW P S   ++ +  +  S Q  P+     W            N L +  T L   +  W
Sbjct: 184 SWKPSSSWDYITVSNNLTSGQATPVCKNNTWC-----------NSLTIRFTSLGKQATSW 232

Query: 191 HT--------FLQGH------------TNHLPCVPTGINGTA--HRQLEQPRTPPLASYA 304
            T        ++ GH            T+  P VP G N      R   QPR+PP ++  
Sbjct: 233 VTGHWWGLRLYVSGHDPGLIFGIRLKITDSGPRVPIGPNPVLSDQRPPSQPRSPPHSNST 292

Query: 305 PTPTCPPLP 331
           PT T   LP
Sbjct: 293 PTETPLTLP 301

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>ENV_MLVRD (P11268) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP76; Spike protein p15E; R protein]
          Length = 665

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 24/129 (18%)
 Frame = +2

Query: 17  SWTPESKVKWLEI--HT*SMQQPPIYGPGAWSKHYISSTESESNILLVLITRLHLDSFRW 190
           SW P S   ++ +  +  S Q  P+     W            N L +  T L   +  W
Sbjct: 184 SWKPSSSWDYITVSNNLTSGQATPVCKNNTWC-----------NSLTIRFTSLGKQATSW 232

Query: 191 HT--------FLQGH------------TNHLPCVPTGINGTA--HRQLEQPRTPPLASYA 304
            T        ++ GH            T+  P VP G N      R   QPR+PP ++  
Sbjct: 233 VTGHWWGLRLYVSGHDPGLIFGIRLKITDSGPRVPIGPNPVLSDQRPPSQPRSPPHSNST 292

Query: 305 PTPTCPPLP 331
           PT T   LP
Sbjct: 293 PTETPLTLP 301

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>PROML_DROME (P82295) Prominin-like protein|
          Length = 1013

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +2

Query: 245 NGTAHRQLEQPRTPPL--ASYAPTPT---CPPLPT 334
           +GT H QL QP  PP+    Y PT      PP PT
Sbjct: 74  HGTTHEQLGQPHWPPVQYTVYRPTTNYTKAPPPPT 108

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>HOMEZ_MOUSE (Q80W88) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 518

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPTDWSA-QQLQ 358
           P +PT    +     E  +TPPL +  P P   PL   W+A QQLQ
Sbjct: 403 PAIPTP---STRSLKEWAKTPPLPAPPPPPDIRPLEKYWAAHQQLQ 445

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>WBS14_MOUSE (Q99MZ3) Williams-Beuren syndrome chromosome region 14 protein|
           homolog (Mlx interactor) (MLX-interacting protein-like)
          Length = 864

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
 Frame = +1

Query: 100 MEQTLHFIDRKRKQHTTSTNY--TPTFGFLPLAYFSSRPYKPSTLRPYRNQW------HG 255
           ME +  F + +  Q  TS+NY  +P+FG +  + FSS    P    P  +        H 
Sbjct: 297 MEISDFFTNYRPPQTPTSSNYIESPSFGPMADSLFSSGILAPEMPSPASSSSSSGMTPHS 356

Query: 256 PQTARTTKNTAAS*LCPNSHLSS 324
             T    +N+ +  L PN  LSS
Sbjct: 357 GNTRLQARNSCSGPLDPNPFLSS 379

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>SIR4_YEAST (P11978) Regulatory protein SIR4 (Silent information regulator 4)|
          Length = 1358

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 209 HTNHLPCVPTGINGTAHRQLEQPRTPPL 292
           HT+  P  P+ +  T+H+QL+QP++ PL
Sbjct: 61  HTS--PHQPSDVKPTSHKQLQQPKSSPL 86

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>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
 Frame = +2

Query: 221 LPCVPTGINGTAHRQ--------LEQPRTPPLASYAP--TPTCPP 325
           +PC PT      HRQ        L QPR PPL   AP  +P  PP
Sbjct: 452 IPCAPT-----LHRQPPPLQPGRLLQPRPPPLVRPAPRQSPRAPP 491

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>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
           homolog)
          Length = 1111

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +1

Query: 124 DRKRKQHTTSTNYTPTFGFLPLAYFSSRPYKPSTLRPYRNQWHGPQTARTTKNTAAS*LC 303
           DR + Q+ T +N  P    LP    + R   PS+LR +    HGP    T ++     L 
Sbjct: 350 DRAKHQNRTHSNEKPYVCKLPGC--TKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLP 407

Query: 304 PNSHLSSIADRLER 345
               LS++  + ER
Sbjct: 408 RAQPLSTVEPKRER 421

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>HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 525

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPTDWSAQQ 352
           P +PT    T     E+  TPPL    P P   PL   W+A Q
Sbjct: 409 PAIPTPPPSTRSLN-ERAETPPLPIPPPPPDIQPLERYWAAHQ 450

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>BC11B_MOUSE (Q99PV8) B-cell lymphoma/leukemia 11B (B-cell CLL/lymphoma 11B)|
           (Radiation-induced tumor suppressor gene 1 protein)
           (mRit1) (COUP-TF-interacting protein 2)
          Length = 884

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 200 LQGHTNHLPCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
           L G+++  P V  G     HR L   +  P + +  TP  PP+P
Sbjct: 370 LAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMP 413

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>HXD9A_BRARE (Q9PWM6) Homeobox protein Hox-D9a (Hox-D9)|
          Length = 262

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +2

Query: 92  PGAWSKHYISSTESESNILLVLITRLHLDSFRW-HTFLQGHTNHLPCVPTGI------NG 250
           P +WS  +  ST + S I    + + HL   R+  ++++   NH+    TG       +G
Sbjct: 61  PASWSSVHQPSTAAVSGIYHPYVHQTHLSDNRYVRSWIEPVANHISL--TGFHPNSRHSG 118

Query: 251 TAHRQLEQPRTPPLASYAPTPTCP 322
           T    L   RT   A    TP+ P
Sbjct: 119 TKTESLPPKRTESAAFETETPSVP 142

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>BC11B_HUMAN (Q9C0K0) B-cell lymphoma/leukemia 11B (B-cell CLL/lymphoma 11B)|
           (Radiation-induced tumor suppressor gene 1 protein)
           (hRit1) (COUP-TF-interacting protein 2)
          Length = 894

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 200 LQGHTNHLPCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
           L G+++  P V  G     HR L   +  P + +  TP  PP+P
Sbjct: 370 LAGNSSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMP 413

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>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
            Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 224  PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
            P  P+   G +   +E P TP  AS++P+P+ PP P
Sbjct: 928  PTPPSYPYGVSQAPVEGPPTP--ASHSPSPSLPPPP 961

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>NR1D1_RAT (Q63503) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 508

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 77  PPIYGPGAWSKHYISSTESESNILLVLITRLHLDSFRWHTFLQGHTNHLPCVPTGINGTA 256
           PP   P  W      ST +++N+L        L+  R     QG +++ P  P   +G A
Sbjct: 217 PPATTPQCWESQGCPSTPNDNNLLAAQRHNEALNGLR-----QGPSSYPPTWP---SGPA 268

Query: 257 HRQLEQPRT 283
           H    QP +
Sbjct: 269 HHSCHQPNS 277

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>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 272 QPRTPPLASYAPTPTCPPLPTDWSAQQ 352
           QP  PP    APTP  PP P+  S  Q
Sbjct: 104 QPPQPPPQPPAPTPAAPPPPSSVSPPQ 130

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>SMG1_CAEEL (O01510) Serine/threonine-protein kinase smg-1 (EC 2.7.11.1)|
           (Suppressor with morphogenetic effect on genitalia
           protein 1)
          Length = 2322

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = +1

Query: 22  DPGKQSKMAGDTYIVDATTTHIWSRSMEQTLHFIDRKRKQHTTSTNYTPTFGFLPLAYFS 201
           D  K++K    T I ++   + + R    T++ + ++R+Q T ++       F+ +  F 
Sbjct: 638 DKTKKAKWKEATTIWESGDCNTYIRQSMSTVYQMSQERQQKTITSTSFGAEEFIIITNFL 697

Query: 202 SRPYKPSTLRPYRNQW 249
            +   P+T +  +N W
Sbjct: 698 LKQATPTTFKKGQNSW 713

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>HOMEZ_RAT (Q8K3E9) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 513

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 269 EQPRTPPLASYAPTPTCPPLPTDWSA-QQLQ 358
           E  +TPPL +  P P   PL   W+A QQLQ
Sbjct: 414 EWAKTPPLPAPPPPPDIRPLERYWAAHQQLQ 444

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>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 1002

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 275 PRTPPLASYAPTPTCPPLPT 334
           P  PPL S  P P  PP+PT
Sbjct: 197 PSLPPLPSIPPIPVPPPVPT 216

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>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
           (Verprolin homology domain-containing protein 1)
          Length = 559

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +2

Query: 206 GHTNHLPCVPTGINGTAHRQLEQP---RTPPLASYAPTPTCPPLPTDWSAQQLQITV 367
           G    +P   +   G    + + P   RTP   S  P P  PPLP+  S   L+ ++
Sbjct: 288 GDAKPIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASM 344

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>M3K11_HUMAN (Q16584) Mitogen-activated protein kinase kinase kinase 11 (EC|
           2.7.11.25) (Mixed lineage kinase 3) (Src-homology 3
           domain-containing proline-rich kinase)
          Length = 847

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 248 GTAHRQLEQPRTPPLASYAPTPTCPP 325
           G    + E P TPP  + AP PT PP
Sbjct: 666 GPGRERGESPTTPPTPTPAPCPTEPP 691

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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2158

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPT 334
           P +P     T  ++ E+P   P    AP+P   P+PT
Sbjct: 530 PALPPTPTPTPEKEPEEPAQAPPVQAAPSPGVAPVPT 566

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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPTDW 340
           PC   G  G   R   QPR PP     P P C   PT W
Sbjct: 356 PCFRCGKAGHWSRDCTQPRPPP----GPCPLCQD-PTHW 389

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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPTDW 340
           PC   G  G   R   QPR PP     P P C   PT W
Sbjct: 356 PCFRCGKAGHWSRDCTQPRPPP----GPCPLCQD-PTHW 389

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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPTDW 340
           PC   G  G   R   QPR PP     P P C   PT W
Sbjct: 355 PCFRCGKAGHWSRDCTQPRPPP----GPCPLCQD-PTHW 388

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>YMD5_CAEEL (P34459) Hypothetical protein F54H12.5|
          Length = 880

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = +2

Query: 104 SKHYISSTESESNILLVLITRL----HLDSFRWHTFLQGHTNHLPCVPTGINGTAHRQLE 271
           S    SST+S +N +L   + +       S+  ++     T   P +P   N T  R   
Sbjct: 377 SSSITSSTDSSTNSMLPETSTIDPGSQSSSYSGNSLTASSTTSDPSIP---NPTRKRITR 433

Query: 272 QPRTPPLASYAPTPTCPP 325
           QP  PP   + P+   PP
Sbjct: 434 QPNYPPWQPHQPSNPNPP 451

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>DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3)
          Length = 1110

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 218 HLPCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
           ++P  P+   GT H  L  P  PPL S    P  PP P
Sbjct: 559 NIPLPPSKEGGTGHSALPPP--PPLPSGGGVPPPPPPP 594

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>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 275 PRTPPLASYAPTPTCPPLPT 334
           P  PP+ S  P P  PP+PT
Sbjct: 197 PSLPPMPSIPPIPVPPPVPT 216

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>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 275 PRTPPLASYAPTPTCPPLPT 334
           P  PP+ S  P P  PP+PT
Sbjct: 197 PSLPPMPSIPPIPVPPPVPT 216

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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 224 PCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPT 334
           P +P     T  +  E+P   P    APT   PP PT
Sbjct: 531 PALPPTPTPTPEKDPEEPAHAPPVQSAPTQAGPPAPT 567

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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 248  GTAHRQLEQPRTPP-LASYAPTPTCPPLP 331
            G + +++   RTPP LA  A  PT PP P
Sbjct: 2292 GVSEKRVPSARTPPVLAEKARVPTVPPRP 2320

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>CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95|
          Length = 244

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 266 LEQPRTP-PLASYAPTPTCPPLPTDWSAQQL 355
           L+  R P P  S   +PT PP P+D+ A QL
Sbjct: 120 LQASRAPSPYLSSLASPTYPPFPSDYLALQL 150

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>SI1L1_MOUSE (Q8C0T5) Signal-induced proliferation-associated 1-like protein 1|
          Length = 1782

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 255 AVPLIP-VGTQGRWFVWP*RKVCQRKESKCRRVISTSSMLLSLS 127
           + P +P +G + R   WP RK   ++ S+  + I TSS L SLS
Sbjct: 67  STPGVPKMGVRARIADWPPRKENVKESSRSSQEIETSSCLESLS 110

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>GCNL2_HUMAN (Q92830) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (hsGCN5)
           (STAF97)
          Length = 837

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 233 PTGINGTAHRQLEQPRTPPLASYAPTPTCPPLPT 334
           PT       R L+ P   P  + AP+P   P+PT
Sbjct: 8   PTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPT 41

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>SI1L1_RAT (O35412) Signal-induced proliferation-associated 1-like protein 1|
           (SPA-1-like protein p1294)
          Length = 1822

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 255 AVPLIP-VGTQGRWFVWP*RKVCQRKESKCRRVISTSSMLLSLS 127
           + P +P +G + R   WP RK   ++ S+  + I TSS L SLS
Sbjct: 67  STPGVPKMGVRARIADWPPRKENVKESSRSSQEIETSSCLESLS 110

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>LARG2_MOUSE (Q5XPT3) Glycosyltransferase-like protein LARGE2 (EC 2.4.-.-)|
           (Glycosyltransferase-like 1B)
          Length = 690

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 65  SMQQPPIYGPGAWSKHYISSTESESNILLVLITRLHLDSFRWHTFLQGHTN 217
           S ++  +  P   + HY  S  +    LL L+    L +FR+H + QGH++
Sbjct: 516 SRRKTALVVPAFETLHYRFSFPNSKAELLTLLDAGSLHTFRYHEWPQGHSS 566

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>K1H8_HUMAN (O76015) Keratin, type I cuticular Ha8 (Hair keratin, type I Ha8)|
          Length = 456

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
 Frame = +2

Query: 134 ESNILLVLITRLHLDSFRWHTFLQGHTNHLPCVPTGINGTAHRQLEQPRTPP---LASYA 304
           E  +LL + TRL  +   +   L+     LPC P               TPP    A  A
Sbjct: 386 EYQVLLDVKTRLENEIATYRNLLESEDCKLPCNPCS-------------TPPSCVTAPCA 432

Query: 305 PTPTCPPLPT 334
           P P+C P  T
Sbjct: 433 PRPSCGPCTT 442

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>K1949_PIG (Q767M0) Protein KIAA1949 homolog|
          Length = 618

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 221 LPCVPTGINGTAHRQLE--QPRTPPLASYAPTPTCPPLP 331
           LP    G  G+  ++ E  + R PP A  +P P  PP P
Sbjct: 408 LPPEDAGTGGSRQQEEEAGELRPPPAAPLSPPPPAPPAP 446

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>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1|
           precursor (Down syndrome cell adhesion molecule 2)
          Length = 2053

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
 Frame = +2

Query: 104 SKHYISSTESESNILLVLITR------LHLDSFRWHTFLQGHTNHLPCVPTGINGTAHRQ 265
           +KH  S    +SN   + +T         LD F       GHT  LPC  +G    A R 
Sbjct: 200 TKHKYSGETRQSNGARLSVTDPAESIPTILDGFHSQEVWAGHTVELPCTASGYPIPAIRW 259

Query: 266 LEQPRTPPLAS 298
           L+  R  P  S
Sbjct: 260 LKDGRPLPADS 270

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>HAP2_HAEIN (P45387) Adhesion and penetration protein precursor (EC 3.4.21.-)|
          Length = 1394

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 211 YKPSTLRPYRNQWHGPQTARTTKNTAAS*LCPNSHLSSIADR 336
           YK   L PY + +H P+  +     A   +  N + S+ +DR
Sbjct: 129 YKKDNLHPYEDDYHNPRLHKFVTEAAPIDMTSNMNGSTYSDR 170

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>CCNT1_PANTR (Q8HXN7) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 725

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 197 FLQGHTNHLPCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
           F++ ++++L     GI+  +    ++PR PPL S  P P  PPLP
Sbjct: 682 FVRPYSDYLNPRAGGISSRSGNT-DKPRPPPLPS-EPPPPLPPLP 724

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>REPA2_BUCAP (O85062) Probable replication-associated protein repA2|
          Length = 250

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 106 QTLHFIDRKRKQHTTSTNYTPTFGFLPLAYFSSRPYKPSTLRPYRNQ 246
           + + FI  KRK+  +S+NY P   FL   +F       ST+  Y ++
Sbjct: 127 EPMGFIKCKRKKTQSSSNYIPKKIFLTSNFFMLFHISQSTINQYLSE 173

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>PUR6_CHICK (P38024) Multifunctional protein ADE2 [Includes:|
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           (EC 6.3.2.6) (SAICAR synthetase);
           Phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21)
           (AIR carboxylase) (AIRC)]
          Length = 426

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 305 PTPTCPPLPTDWSAQQL 355
           P   CPPL +DW AQ +
Sbjct: 347 PVVNCPPLSSDWGAQDV 363

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>LCP2_MOUSE (Q60787) Lymphocyte cytosolic protein 2 (SH2 domain-containing|
           leucocyte protein of 76 kDa) (SLP-76 tyrosine
           phosphoprotein) (SLP76)
          Length = 533

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +2

Query: 233 PTGINGTAHRQLEQPRT------PPLASYAPTPTCPPLPT 334
           P   + T    +++P T      PP+    P P  PPLPT
Sbjct: 163 PNSFHNTNSMYIDRPPTGKVSQQPPVPPLRPKPALPPLPT 202

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>CCNT1_HUMAN (O60563) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 726

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 197 FLQGHTNHLPCVPTGINGTAHRQLEQPRTPPLASYAPTPTCPPLP 331
           F++ ++++L     GI+  +    ++PR PPL S  P P  PPLP
Sbjct: 683 FVRPYSDYLNPRSGGISSRSGNT-DKPRPPPLPS-EPPPPLPPLP 725


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,097,168
Number of Sequences: 219361
Number of extensions: 1212588
Number of successful extensions: 4487
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4438
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result