>IPT_PSESS (P06619) Isopentenyl transferase (Dimethylallyl transferase) (EC|
           2.5.1.-) (Trans-zeatin producing protein)
          Length = 234

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 221 ERDGCTLQHAIGPCRQPPEEVQRNRRHLVAEPRVPQGVQACKENHNTERCDV 376
           +R  C    A G  R  PEE+Q  RR  +   R+ +GV + +E ++  + +V
Sbjct: 33  DRVQCCFDIATGSGRPHPEELQSTRRIYLDNRRISEGVISAEEANDRLKLEV 84

>BAS1_YEAST (P22035) Myb-like DNA-binding protein BAS1|
          Length = 811

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 53  PS*NTDIQATEKATNNDIVQFNFSATTRRPH 145
           P  NT I     ATNN+I+Q N SA +  P+
Sbjct: 563 PQANTLIPTNSTATNNEIIQGNVSANSMSPN 593

>AERA_AERSA (Q08676) Aerolysin precursor (Hemolysin-3)|
          Length = 489

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 42  KDQNHPKTQTYRQRKRLQTTT*FSSIFRQPRVDP--IIISVAAIEH-ARHRATETSKALD 212
           K  N  KT TY   +++ T     + F+ P V    + I +AA +  A  +   T++ + 
Sbjct: 247 KATNWSKTDTYSLSEKVTT----KNKFQWPLVGETELAIEIAASQSWASQKGGSTTETVS 302

Query: 213 REARETVAPYSMLSV 257
            EAR TV P+S L V
Sbjct: 303 VEARPTVPPHSSLPV 317

>AERA_AERSO (Q06304) Aerolysin precursor (Hemolysin)|
          Length = 488

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 42  KDQNHPKTQTYRQRKRLQTTT*FSSIFRQPRVDP--IIISVAAIEH-ARHRATETSKALD 212
           K  N  KT TY   +++ T     + F+ P V    + I +AA +  A  +   T++ + 
Sbjct: 246 KATNWSKTDTYSLSEKVTT----KNKFQWPLVGETELAIEIAASQSWASQKGGSTTETVS 301

Query: 213 REARETVAPYSMLSV 257
            EAR TV P+S L V
Sbjct: 302 VEARPTVPPHSSLPV 316

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
 Frame = -2

Query: 365  VPCCGFP---CRPVHPEAPEVPPQDAVCSAE---------LLQEAACKD-R*HAVRCNR- 228
            +P C  P   C    P AP    +  VC A+         L  +  CKD +   +  N+ 
Sbjct: 4278 LPSCFDPEGLCGGASPRAPSTCREGCVCEADYVLREDKCVLRTQCGCKDAQGDLIPANKT 4337

Query: 227  -LSRFAIQRLTCFGGSMPSMFYSC 159
             L+R   Q+ TC GG++    + C
Sbjct: 4338 WLTRGCAQKCTCKGGNIHCWNFKC 4361



 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
 Frame = -2

Query: 344  CRPVHPEAPEVPPQDAVCSAE---------LLQEAACKDR*HAV---RCNRLSRFAIQRL 201
            CR   PEAP    +  VC  +         L  E  CKD    +       ++R   Q  
Sbjct: 2724 CRGTSPEAPSTCKEGCVCDPDYVLSNDKCVLRIECGCKDAQGVLIPAGKTWINRGCTQSC 2783

Query: 200  TCFGGSMPSMFYSC 159
            +C GG++    + C
Sbjct: 2784 SCMGGAIQCQNFKC 2797

>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 945

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +2

Query: 203 GAGSRSERDGCTLQHAIGPCRQPPEEVQRNRRHLVAEPRVPQG 331
           GAG R  R G     A+G   QPP   +R RR L AEP   +G
Sbjct: 41  GAGER--RGGA----AVGGGEQPPPAPRRERRDLPAEPAAARG 77

>SPRR4_MOUSE (Q8CGN8) Small proline-rich protein 4|
          Length = 76

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +2

Query: 257 PCRQPPEEVQRNRRHLVAEPRVPQGVQACKENHNT----ERCDVQDD 385
           PC+ PP + Q        +P VPQ  + C     T    E+C  Q D
Sbjct: 24  PCQPPPTKCQEACVPKTKDPCVPQAKKQCPARSTTNPAQEKCPAQQD 70

>VE7_HPV25 (P36823) Protein E7|
          Length = 102

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 126 QPRVDPIIISVAAIEHARHRATETSKALDREARETVAP 239
           QP V P+ +       A H+ TE   A+DR   + VAP
Sbjct: 19  QPEVQPVDLFCEEELPAEHQETEEEPAIDRTPYKVVAP 56

>SIPB_SALTY (Q56019) Cell invasion protein sipB (Effector protein sipB)|
          Length = 593

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 159 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 293
           AA+E A   ATE  +ALD+    TV         +  A ++L KF GT
Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233

>SIPB_SALTI (Q56134) Cell invasion protein sipB (Effector protein sipB)|
          Length = 593

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 159 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 293
           AA+E A   ATE  +ALD+    TV         +  A ++L KF GT
Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233

>SIPB_SALDU (Q79BT1) Cell invasion protein sipB (Effector protein sipB)|
          Length = 593

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 159 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 293
           AA+E A   ATE  +ALD+    TV         +  A ++L KF GT
Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233

>NU5M_RHIST (P50367) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 654

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 195 TSKALDREARETVAPYSMLSVLAGSLLKKFSGTD 296
           T+K LDR A E V PY +++V   S   K SG D
Sbjct: 574 TNKILDRGAIELVGPYGLVNVFK-SASNKVSGLD 606

>CORT_DROME (Q960N3) Protein cortex|
          Length = 483

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 162 AIEHARHRATETSKALDREARETVAPYSMLSVLAGSLLKKFSGTDGILWRNL 317
           AI++A H        +D         Y+M+   +G ++   SG D +LWRNL
Sbjct: 146 AIQNATHEMPGICSPVD---------YNMMDWSSGGMVAMSSGQDVMLWRNL 188

>NCKX6_HUMAN (Q6J4K2) Sodium/potassium/calcium exchanger 6 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 6) (Solute carrier
           family 24 member 6)
          Length = 584

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 363 SVLWFSLQACTP*GTRGSATRCRLFR*TSSGGCLQGPIACCKVQPSLSLRDPAPYL 196
           SVL   L A T  GTRGS+T   +     + G  Q P+  C+    L++ D   ++
Sbjct: 13  SVLCVLLMAETVSGTRGSSTGAHISPQFPASGVNQTPVVDCRKVCGLNVSDRCDFI 68

>DLGP4_HUMAN (Q9Y2H0) Disks large-associated protein 4 (DAP-4)|
           (SAP90/PSD-95-associated protein 4) (SAPAP4)
           (PSD-95/SAP90-binding protein 4)
          Length = 989

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -2

Query: 329 PEAPEVPPQDAVCSAELLQEAACKDR*HAVRCNRLSRFAIQRLTCFGGS 183
           PEAPE PP+ A   +E     + +    A    +LS   IQ  T   GS
Sbjct: 630 PEAPEPPPKHAALKSEQGTLTSSESHPEAAPKRKLSSIGIQERTRRNGS 678

>RNZ_BACTN (Q89ZN1) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 316

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 380 PVRHTVPCCGF 348
           P+RH +PCCGF
Sbjct: 140 PLRHRIPCCGF 150

>SLYA_EDWTA (Q9F6B2) Transcriptional regulator slyA (Edwardsiella haemolysin|
           activator)
          Length = 143

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 112 VQFFGNHASTPSSSQLQL*NMLGIEPPKQVR 204
           V  +  H   P  SQ+QL   +GIE P  VR
Sbjct: 35  VTLYNIHRLPPDQSQIQLAKAIGIEQPSLVR 65

>IRF4_HUMAN (Q15306) Interferon regulatory factor 4 (IRF-4)|
           (Lymphocyte-specific interferon regulatory factor)
           (LSIRF) (NF-EM5) (Multiple myeloma oncogene 1)
          Length = 451

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 350 FPCRPVHPEAPEVPPQDAVCSAELLQEAACK 258
           + C P   +AP VP + ++ SAE L  + C+
Sbjct: 221 YACAPPESQAPGVPTEPSIRSAEALAFSDCR 251


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,402,763
Number of Sequences: 219361
Number of extensions: 1047384
Number of successful extensions: 2903
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2903
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)