ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473145.1| Oryza sativa (japonica cultivar-group), predic... 100 6e-18
2dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
3dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
4gb|AY106405.1| Zea mays PCO131557 mRNA sequence 98 2e-17
5emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 60 5e-06
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
7gb|AF334831.1| Castanea sativa STK1 mRNA, partial cds 44 0.30
8gb|DQ004855.1| Listeria bacteriophage P100, complete genome 42 1.2
9ref|NM_118966.2| Arabidopsis thaliana unknown protein AT4G28260 ... 40 4.7
10gb|BT018270.1| Zea mays clone EL01T0203C06.c mRNA sequence 40 4.7
11ref|XM_719735.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 4.7
12ref|XM_668375.1| Plasmodium berghei strain ANKA hypothetical pro... 40 4.7
13emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 40 4.7
14gb|AY136412.1| Arabidopsis thaliana putative protein (At4g28260)... 40 4.7
15dbj|AP004950.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 4.7 
>ref|XM_473145.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2193

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 257  atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 316
            |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 2186 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 2127

                                      
Query: 317  ttatggaacttgtgaaagcatggcaa 342
            ||||||||| ||||||||||||||||
Sbjct: 2126 ttatggaacatgtgaaagcatggcaa 2101
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>dbj|AK073609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048J15, full
            insert sequence
          Length = 2753

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 257  atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 316
            |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 2487 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 2428

                                      
Query: 317  ttatggaacttgtgaaagcatggcaa 342
            ||||||||| ||||||||||||||||
Sbjct: 2427 ttatggaacatgtgaaagcatggcaa 2402
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>dbj|AK067002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B14, full
            insert sequence
          Length = 3674

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 257  atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactct 316
            |||||| |||||||||| || || |||||||| ||||| ||||||||||| ||||| |||
Sbjct: 3408 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcattct 3349

                                      
Query: 317  ttatggaacttgtgaaagcatggcaa 342
            ||||||||| ||||||||||||||||
Sbjct: 3348 ttatggaacatgtgaaagcatggcaa 3323
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>gb|AY106405.1| Zea mays PCO131557 mRNA sequence
          Length = 797

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                       
Query: 259 cccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcactcttt 318
           |||| ||||||| || ||||||||||||||||| || ||||| ||||| || ||||||||
Sbjct: 584 cccaaacttgcagactgggcacagtttctttctcctaagccactcgtcaatacactcttt 525

                                    
Query: 319 atggaacttgtgaaagcatggcaaa 343
           |||||||||||||||||| ||||||
Sbjct: 524 atggaacttgtgaaagcaaggcaaa 500
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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
             complete sequence
          Length = 158601

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 257   atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcact 314
             |||||| |||||||||| || || |||||||| ||||| ||||||||||| |||||||
Sbjct: 33597 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcact 33654



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 314   tctttatggaacttgtgaaagcatggcaa 342
             |||||||||||| ||||||||||||||||
Sbjct: 33775 tctttatggaacatgtgaaagcatggcaa 33803
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 257      atcccacacttgcaaacagggcacagtttctttcttctcagccattcgtcgatgcact 314
                |||||| |||||||||| || || |||||||| ||||| ||||||||||| |||||||
Sbjct: 25547400 atcccagacttgcaaactggacatagtttcttccttcttagccattcgtctatgcact 25547457



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 314      tctttatggaacttgtgaaagcatggcaa 342
                |||||||||||| ||||||||||||||||
Sbjct: 25547578 tctttatggaacatgtgaaagcatggcaa 25547606
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>gb|AF334831.1| Castanea sativa STK1 mRNA, partial cds
          Length = 758

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 38  ggatatacaaaaatggtgaaga 59
           ||||||||||||||||||||||
Sbjct: 581 ggatatacaaaaatggtgaaga 602
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>gb|DQ004855.1| Listeria bacteriophage P100, complete genome
          Length = 131384

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 214    ggaagaacacgaaaactaaaa 234
              |||||||||||||||||||||
Sbjct: 113003 ggaagaacacgaaaactaaaa 112983
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>ref|NM_118966.2| Arabidopsis thaliana unknown protein AT4G28260 mRNA, complete cds
          Length = 2322

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 284 ttctttcttctcagccattc 303
           ||||||||||||||||||||
Sbjct: 581 ttctttcttctcagccattc 562
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>gb|BT018270.1| Zea mays clone EL01T0203C06.c mRNA sequence
          Length = 1200

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 308 atgcactctttatggaacttgtgaaagcatggcaaa 343
           ||||||||||| || |||||||| | ||||||||||
Sbjct: 455 atgcactctttgtgaaacttgtgcatgcatggcaaa 420
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>ref|XM_719735.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04518)
           partial mRNA
          Length = 2424

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  atggatatacaaaaatggtg 55
           ||||||||||||||||||||
Sbjct: 721 atggatatacaaaaatggtg 740
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>ref|XM_668375.1| Plasmodium berghei strain ANKA hypothetical protein (PB000153.03.0)
           partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  atggatatacaaaaatggtg 55
           ||||||||||||||||||||
Sbjct: 721 atggatatacaaaaatggtg 740
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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    ttctttcttctcagccattc 303
              ||||||||||||||||||||
Sbjct: 120548 ttctttcttctcagccattc 120529
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>gb|AY136412.1| Arabidopsis thaliana putative protein (At4g28260) mRNA, complete
           cds
          Length = 1753

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 284 ttctttcttctcagccattc 303
           ||||||||||||||||||||
Sbjct: 581 ttctttcttctcagccattc 562
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>dbj|AP004950.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT42E10, TM0123,
             complete sequence
          Length = 79601

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gaaaactaaaactgcatttg 243
             ||||||||||||||||||||
Sbjct: 10771 gaaaactaaaactgcatttg 10790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,751,713
Number of Sequences: 3902068
Number of extensions: 3751713
Number of successful extensions: 86979
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86936
Number of HSP's gapped (non-prelim): 43
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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