>LHX2_RAT (P36198) LIM/homeobox protein Lhx2 (Homeobox protein LH-2)|
          Length = 426

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 234 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 55
           L  + K+   + +KC    +    +  C++ DG     +YC +D +RR++  RC     G
Sbjct: 65  LLAVDKQWHMRCLKCCECKLNLESELTCFSKDG----SIYCKEDYYRRFSVQRCARCHLG 120

Query: 54  I 52
           I
Sbjct: 121 I 121

>LHX2_MOUSE (Q9Z0S2) LIM/homeobox protein Lhx2|
          Length = 406

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 234 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 55
           L  + K+   + +KC    +    +  C++ DG     +YC +D +RR++  RC     G
Sbjct: 66  LLAVDKQWHMRCLKCCECKLNLESELTCFSKDG----SIYCKEDYYRRFSVQRCARCHLG 121

Query: 54  I 52
           I
Sbjct: 122 I 122

>LHX2_HUMAN (P50458) LIM/homeobox protein Lhx2 (Homeobox protein LH-2)|
          Length = 406

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 234 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 55
           L  + K+   + +KC    +    +  C++ DG     +YC +D +RR++  RC     G
Sbjct: 66  LLAVDKQWHMRCLKCCECKLNLESELTCFSKDG----SIYCKEDYYRRFSVQRCARCHLG 121

Query: 54  I 52
           I
Sbjct: 122 I 122

>YBE1_SCHPO (O42980) Putative thiol protease C17D11.01 (EC 3.4.22.-)|
          Length = 420

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +1

Query: 46  SMDTREGHDTSIKCPTTKNIFPAVDYKSHLPIIIPTYLVLIKTNGPDSTLDSLAPSTLR* 225
           S+ TR   D     PT    F   D +SHLP++     VL K++    T    + S L+ 
Sbjct: 219 SLGTRVSGDFDEDFPTGTVFF---DLESHLPLLDVALPVLPKSSDSSETSHESSNSNLKK 275

Query: 226 KEETGRPQQSN 258
             E+G     N
Sbjct: 276 SSESGSTNHHN 286

>LAMA3_HUMAN (Q16787) Laminin alpha-3 chain precursor (Epiligrin 170 kDa subunit)|
            (E170) (Nicein alpha subunit)
          Length = 1713

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 104  MFFVVGHFIDVSCPSRVSIDIYSGALEMEALS 9
            +F+V G+  D   PSR+S   Y G +E++ L+
Sbjct: 917  VFYVGGYPPDFKLPSRLSFPPYKGCIELDDLN 948

>COX2_APILI (P20375) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide II)
          Length = 225

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 178 HLFLLGPGMLE**WVSVIYSLLLERCFSSLDIL*MCH--VPPGYPLIFIVEHWKWKH 14
           +LFLL    +E  W  +   +LL  CF SL IL +    V P + +  I   W W +
Sbjct: 52  NLFLLKNHNIEIIWTIIPIIILLIICFPSLKILYLIDEIVNPFFSIKSIGHQWYWSY 108

>COX2_APIKO (P50268) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide II)
          Length = 225

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 178 HLFLLGPGMLE**WVSVIYSLLLERCFSSLDIL*MCH--VPPGYPLIFIVEHWKWKH 14
           +LFLL    +E  W  V   +LL  CF SL IL +    + P + +  I   W W +
Sbjct: 52  NLFLLKNHNIEIIWTIVPIVILLIICFPSLKILYLIDEIINPFFSIKSIGHQWYWSY 108

>LHX9_MOUSE (Q9WUH2) LIM/homeobox protein Lhx9|
          Length = 388

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 234 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 55
           L  + K+   + +KC    +    +  C+  DG     +YC +D +RR++  RC     G
Sbjct: 75  LLAVDKQWHLRCLKCCECKLALESELTCFAKDG----SIYCKEDYYRRFSVQRCARCHLG 130

Query: 54  I 52
           I
Sbjct: 131 I 131

>LHX9_HUMAN (Q9NQ69) LIM/homeobox protein Lhx9|
          Length = 388

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 234 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 55
           L  + K+   + +KC    +    +  C+  DG     +YC +D +RR++  RC     G
Sbjct: 75  LLAVDKQWHLRCLKCCECKLALESELTCFAKDG----SIYCKEDYYRRFSVQRCARCHLG 130

Query: 54  I 52
           I
Sbjct: 131 I 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,833,351
Number of Sequences: 219361
Number of extensions: 902824
Number of successful extensions: 1899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)