>VPX_HV2ST (P20881) VPX protein (X ORF protein) (Viral accessory protein)|
          Length = 112

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 308 KKVRRCHRFRGTTSISGSHGEADQGNGPPALP*QGL 201
           +K    H  RG T + G HG     +GPP  P  GL
Sbjct: 76  QKAMFIHSKRGCTCLGGGHGPGGWRSGPPPPPPPGL 111

>YNV5_CAEEL (P34568) Hypothetical protein T16H12.5|
          Length = 451

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 109 QLVNWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAGGPFP*SASPWEPLIDV 273
           +LV+  VG G  +  S G+G +            HGR+  P P SAS  +PL+ V
Sbjct: 39  RLVSMEVGMGNDEVVSSGSGNS-----------AHGRSISPSPSSASHGDPLLPV 82

>VPX_HV2G1 (P18045) VPX protein (X ORF protein) (Viral accessory protein)|
          Length = 112

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 290 HRFRGTTSISGSHGEADQGNGPPALP*QGL 201
           H  RG T + G HG     +GPP  P  GL
Sbjct: 82  HFKRGCTCLGGGHGPGGWRSGPPPPPPPGL 111

>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
            chain)
          Length = 1798

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 100  CPAQLVNWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAG 225
            C     N   G G Q  + H + RAR P C      CH RAG
Sbjct: 1079 CAPNFWNLTSGHGCQPCACHPS-RARGPTCNEFTGQCHCRAG 1119

>ORN_NOCFA (Q5Z0A9) Oligoribonuclease (EC 3.1.-.-)|
          Length = 216

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -2

Query: 307 RRCAVAIVFAEQH-----RLVAPTVKQIKGTARRLSHDRASAHRNTPGSERDLHHEM 152
           RR  V +  AEQ      R   PT + +      ++ DRA   R+ P  +  LH+ M
Sbjct: 74  RRSTVTVAEAEQQVLDYIRQYVPTPRTVPLAGNSIATDRAFIARDMPALDAHLHYRM 130

>Y4650_STRCO (P41108) Putative lipoprotein SCO4650 precursor|
          Length = 285

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 131 GAACRISHLMVQVALAPRCVTVCRGPVMGEPAGRS 235
           G   R + + V V+ A  CVT C GP   + AG S
Sbjct: 3   GTTARRTVVSVAVSAALACVTACTGPGGSDDAGHS 37

>LAMB2_MOUSE (Q61292) Laminin beta-2 chain precursor (S-laminin) (S-LAM)|
          Length = 1799

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 100  CPAQLVNWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAG 225
            C     N+  G G Q  + H + RAR P C      CH  AG
Sbjct: 1080 CAPNFWNFTSGRGCQPCACHPS-RARGPTCNEFTGQCHCHAG 1120

>PRKDC_CANFA (Q8WN22) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4144

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 274  QHRLVAPTVKQIKGTARR--LSHDRASAHRNTPGSERDLHHEMRNPA 140
            QH  +A     IK   R   LS D  S  RN P   + LH ++ NP+
Sbjct: 2103 QHECMATMTALIKHMQRNQILSKDEGSVPRNLPPWMKFLHDKLGNPS 2149

>LAMB2_RAT (P15800) Laminin beta-2 chain precursor (S-laminin) (Laminin chain|
            B3)
          Length = 1801

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 100  CPAQLVNWWVGSGMQDFSSHGAGRARSPVCYGVQRPCHGRAG 225
            C     N+  G G Q  + H + RAR P C      CH  AG
Sbjct: 1082 CAPNFWNFTSGRGCQPCACHPS-RARGPTCNEFTGQCHCHAG 1122

>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 238 KGTARRLSHDRASAHRNTPGSERDLHHEMRNPACRSPP 125
           +G+  R S    ++HRN  G+     H+ ++P    PP
Sbjct: 42  RGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPP 79

>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 238 KGTARRLSHDRASAHRNTPGSERDLHHEMRNPACRSPP 125
           +G+  R S    ++HRN  G+     H+ ++P    PP
Sbjct: 42  RGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPP 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,007,444
Number of Sequences: 219361
Number of extensions: 1280762
Number of successful extensions: 3023
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3023
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)