ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191989.1| Oryza sativa (japonica cultivar-group), predic... 153 5e-34
2dbj|AK111983.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
3dbj|AK102209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
4gb|BT017362.1| Zea mays clone EL01N0324E06.c mRNA sequence 111 2e-21
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
6dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
7gb|BT024072.1| Zea mays clone EL01N0506A08 mRNA sequence 111 2e-21
8gb|AY106604.1| Zea mays PCO086088 mRNA sequence 103 4e-19
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
10dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
11dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
12dbj|AK111618.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.076
13gb|BT016744.1| Zea mays clone Contig577 mRNA sequence 44 0.30
14gb|AF361487.1| Campoletis sonorensis ichnovirus segment Q, compl... 44 0.30
15gb|AY110292.1| Zea mays CL24928_1 mRNA sequence 44 0.30
16ref|NM_128655.3| Arabidopsis thaliana ATP binding / kinase/ prot... 42 1.2
17gb|AC102923.10| Mus musculus chromosome 1, clone RP24-262J2, com... 42 1.2
18gb|AY813802.1| Schistosoma japonicum SJCHGC03550 protein mRNA, c... 42 1.2
19emb|BX004784.9| Zebrafish DNA sequence from clone DKEY-82I7 in l... 42 1.2
20emb|AL929172.6| Zebrafish DNA sequence from clone DKEYP-46C10 in... 42 1.2
21ref|NM_148600.1| Arabidopsis thaliana ATP binding AT1G58602 mRNA... 40 4.7
22ref|XM_632416.1| Dictyostelium discoideum hypothetical protein (... 40 4.7
23ref|XM_871103.1| PREDICTED: Bos taurus similar to cardiomyopathy... 40 4.7
24ref|XM_876994.1| PREDICTED: Bos taurus similar to ubiquitin spec... 40 4.7
25ref|XM_876943.1| PREDICTED: Bos taurus similar to ubiquitin spec... 40 4.7
26ref|XM_582990.2| PREDICTED: Bos taurus similar to ubiquitin spec... 40 4.7
27ref|XM_865640.1| PREDICTED: Bos taurus similar to ubiquitin spec... 40 4.7
28ref|XM_862063.1| PREDICTED: Canis familiaris similar to SWI/SNF ... 40 4.7
29ref|XM_862054.1| PREDICTED: Canis familiaris similar to SWI/SNF ... 40 4.7
30ref|XM_862045.1| PREDICTED: Canis familiaris similar to SWI/SNF ... 40 4.7
31ref|XM_862038.1| PREDICTED: Canis familiaris similar to SWI/SNF ... 40 4.7
32ref|XM_862026.1| PREDICTED: Canis familiaris similar to SWI/SNF ... 40 4.7
33ref|XM_532676.2| PREDICTED: Canis familiaris similar to SWI/SNF ... 40 4.7
34gb|AC107761.9| Mus musculus chromosome 7, clone RP23-184M3, comp... 40 4.7
35emb|AL158214.33| Human DNA sequence from clone RP11-543E8 on chr... 40 4.7
36gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 4.7
37emb|CR318645.2| Zebrafish DNA sequence from clone CH211-161F7 in... 40 4.7
38gb|AY091139.1| Arabidopsis thaliana 40 4.7
39gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Can... 40 4.7
40emb|BX322565.11| Zebrafish DNA sequence from clone CH211-262K18 ... 40 4.7
41emb|BX294098.11| Zebrafish DNA sequence from clone CH211-254P12 ... 40 4.7
42emb|BX510349.5| Zebrafish DNA sequence from clone CH211-69E13 in... 40 4.7
43gb|AC016153.21| Homo sapiens 12 BAC RP11-1022D13 (Roswell Park C... 40 4.7
44gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Ca... 40 4.7
45dbj|AB078516.1| Arabidopsis thaliana genomic DNA, chromosome 1, ... 40 4.7
46gb|AC005386.1|AC005386 citb_57_l_21, complete sequence 40 4.7
47emb|BX255913.8| Zebrafish DNA sequence from clone DKEY-85N7 in l... 40 4.7
48emb|BX294095.13| Zebrafish DNA sequence from clone CH211-248L17 ... 40 4.7
49emb|Z36028.1|SCYBR159W S.cerevisiae chromosome II reading frame ... 40 4.7
50emb|Z36027.1|SCYBR158W S.cerevisiae chromosome II reading frame ... 40 4.7
51gb|DQ332743.1| Synthetic construct Saccharomyces cerevisiae clon... 40 4.7
52dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 4.7
53gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosom... 40 4.7
54gb|AC161238.7| Mus musculus chromosome 19, clone RP24-288C19, co... 40 4.7
55emb|AL808120.9| Mouse DNA sequence from clone RP23-418E2 on chro... 40 4.7
56gb|U11583.2|YSCH9196 Saccharomyces cerevisiae chromosome VIII co... 40 4.7
57gb|AY067301.1| Schmidtea mediterranea clone H.34.10f unknown mRN... 40 4.7
58gb|AC133964.2| Homo sapiens BAC clone RP11-288B20 from 4, comple... 40 4.7 
>ref|NM_191989.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2100

 Score =  153 bits (77), Expect = 5e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
            ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 2084 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 2025

                                                     
Query: 305  cagcaatctgcaattaacttgccaagaggcccttctggaat 345
            || |||||||||||||||||||||||||| ||||| |||||
Sbjct: 2024 caacaatctgcaattaacttgccaagaggtccttcaggaat 1984
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>dbj|AK111983.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-H11, full
            insert sequence
          Length = 1632

 Score =  153 bits (77), Expect = 5e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
            ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1270 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 1211

                                                     
Query: 305  cagcaatctgcaattaacttgccaagaggcccttctggaat 345
            || |||||||||||||||||||||||||| ||||| |||||
Sbjct: 1210 caacaatctgcaattaacttgccaagaggtccttcaggaat 1170
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>dbj|AK102209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087I01, full
            insert sequence
          Length = 3442

 Score =  145 bits (73), Expect = 1e-31
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
            ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 3082 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 3023

                                                     
Query: 305  cagcaatctgcaattaacttgccaagaggcccttctggaat 345
            || |||||||||||||||| ||||||||| ||||| |||||
Sbjct: 3022 caacaatctgcaattaactcgccaagaggtccttcaggaat 2982
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>gb|BT017362.1| Zea mays clone EL01N0324E06.c mRNA sequence
          Length = 1337

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 245 tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
           |||||||| ||||| || || |||||||||||||||||||||||||  |  |||||||||
Sbjct: 202 tcgcagtccagcaaacgggttaggatctcctggcagctcggccgattctcaggctctgcc 261

                                                           
Query: 305 cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagc 352
           |||||||||||||||||| |||| ||||| ||||| ||||| ||||||
Sbjct: 262 cagcaatctgcaattaacctgccgagaggtccttcaggaatctcaagc 309
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                            
Query: 245      tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
                ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 27686541 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 27686600

                            
Query: 305      cagcaatctgca 316
                || |||||||||
Sbjct: 27686601 caacaatctgca 27686612



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 312      ctgcaattaacttgccaagaggcccttctggaat 345
                |||||||||||||||||||||| ||||| |||||
Sbjct: 27686731 ctgcaattaacttgccaagaggtccttcaggaat 27686764
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>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485G01
          Length = 167203

 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                         
Query: 245   tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
             ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 95107 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 95166

                         
Query: 305   cagcaatctgca 316
             || |||||||||
Sbjct: 95167 caacaatctgca 95178



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 312   ctgcaattaacttgccaagaggcccttctggaat 345
             |||||||||||||||||||||| ||||| |||||
Sbjct: 95297 ctgcaattaacttgccaagaggtccttcaggaat 95330
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>gb|BT024072.1| Zea mays clone EL01N0506A08 mRNA sequence
          Length = 2265

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
            |||||||| ||||| || || |||||||||||||||||||||||||  |  |||||||||
Sbjct: 1980 tcgcagtccagcaaacgggttaggatctcctggcagctcggccgattctcaggctctgcc 1921

                                                            
Query: 305  cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagc 352
            |||||||||||||||||| |||| ||||| ||||| ||||| ||||||
Sbjct: 1920 cagcaatctgcaattaacctgccgagaggtccttcaggaatctcaagc 1873
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>gb|AY106604.1| Zea mays PCO086088 mRNA sequence
          Length = 1648

 Score =  103 bits (52), Expect = 4e-19
 Identities = 94/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcgcagtcgagcaagcgagtgaggatctcctggcagctcggccgatcttggggctctgcc 304
            |||||||| ||||| || || |||||||||||||||||||||||||  |  |||||||||
Sbjct: 1425 tcgcagtccagcaaacgggttaggatctcctggcagctcggccgattctcaggctctgcc 1366

                                                            
Query: 305  cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagc 352
            |||||||||||||| ||| |||| ||||| ||||| ||||| ||||||
Sbjct: 1365 cagcaatctgcaatcaacctgccgagaggtccttcaggaatctcaagc 1318
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 245     tcgcagtcgagcaagcgagtgaggatctcctggca 279
               |||||||| |||||||| ||||| |||||||||||
Sbjct: 8016110 tcgcagtcaagcaagcgggtgagaatctcctggca 8016076
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0503B05
          Length = 156814

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 245  tcgcagtcgagcaagcgagtgaggatctcctggca 279
            |||||||| |||||||| ||||| |||||||||||
Sbjct: 4303 tcgcagtcaagcaagcgggtgagaatctcctggca 4269
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>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0082C09
          Length = 160665

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 245    tcgcagtcgagcaagcgagtgaggatctcctggca 279
              |||||||| |||||||| ||||| |||||||||||
Sbjct: 139525 tcgcagtcaagcaagcgggtgagaatctcctggca 139491
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>dbj|AK111618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099H24, full
            insert sequence
          Length = 2957

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 245  tcgcagtcgagcaagcgagtgaggatctcctggca 279
            |||||||| |||||||| ||||| |||||||||||
Sbjct: 2624 tcgcagtcaagcaagcgggtgagaatctcctggca 2590
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>gb|BT016744.1| Zea mays clone Contig577 mRNA sequence
          Length = 1564

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 299  tctgcccagcaatctgcaattaacttgccaagaggcccttctggaatttc 348
            ||||||||||||||||| || ||  | ||||||||||| ||||| |||||
Sbjct: 1310 tctgcccagcaatctgctatcaagcttccaagaggcccatctggtatttc 1261
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>gb|AF361487.1| Campoletis sonorensis ichnovirus segment Q, complete sequence
          Length = 12098

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 133  gctagatttttacaagttttat 154
            ||||||||||||||||||||||
Sbjct: 6797 gctagatttttacaagttttat 6776
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>gb|AY110292.1| Zea mays CL24928_1 mRNA sequence
          Length = 626

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 299 tctgcccagcaatctgcaattaacttgccaagaggcccttctggaatttc 348
           ||||||||||||||||| || ||  | ||||||||||| ||||| |||||
Sbjct: 228 tctgcccagcaatctgctatcaagcttccaagaggcccatctggtatttc 277
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>ref|NM_128655.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-tyrosine kinase
            AT2G31010 mRNA, complete cds
          Length = 3023

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 296  ggctctgcccagcaatctgcaatta 320
            ||||||||||| |||||||||||||
Sbjct: 2470 ggctctgcccaacaatctgcaatta 2446
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>gb|AC102923.10| Mus musculus chromosome 1, clone RP24-262J2, complete sequence
          Length = 159541

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    aagagtttaatatatgtatat 107
             |||||||||||||||||||||
Sbjct: 79596 aagagtttaatatatgtatat 79616
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>gb|AY813802.1| Schistosoma japonicum SJCHGC03550 protein mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 87  aagagtttaatatatgtatatcctt 111
           ||||||||||||||| |||||||||
Sbjct: 427 aagagtttaatatatatatatcctt 451
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>emb|BX004784.9| Zebrafish DNA sequence from clone DKEY-82I7 in linkage group 25,
             complete sequence
          Length = 160429

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 135   tagatttttacaagttttata 155
             |||||||||||||||||||||
Sbjct: 63509 tagatttttacaagttttata 63529
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>emb|AL929172.6| Zebrafish DNA sequence from clone DKEYP-46C10 in linkage group 25,
             complete sequence
          Length = 182666

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   tagatttttacaagttttata 155
             |||||||||||||||||||||
Sbjct: 25957 tagatttttacaagttttata 25937
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>ref|NM_148600.1| Arabidopsis thaliana ATP binding AT1G58602 mRNA, complete cds
          Length = 4299

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   aagagtttaatatatgtata 106
            ||||||||||||||||||||
Sbjct: 4180 aagagtttaatatatgtata 4161
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>ref|XM_632416.1| Dictyostelium discoideum hypothetical protein (DDB0187177), partial
            mRNA
          Length = 3546

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  tagatttttacaagttttat 154
            ||||||||||||||||||||
Sbjct: 1083 tagatttttacaagttttat 1102
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>ref|XM_871103.1| PREDICTED: Bos taurus similar to cardiomyopathy associated 1
            (LOC509670), mRNA
          Length = 5463

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  tcaggctctcagctctcagc 240
            ||||||||||||||||||||
Sbjct: 4223 tcaggctctcagctctcagc 4242
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>ref|XM_876994.1| PREDICTED: Bos taurus similar to ubiquitin specific protease 52,
            transcript variant 9 (LOC538820), mRNA
          Length = 4508

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  gaaacggttccacctctgaa 179
            ||||||||||||||||||||
Sbjct: 1684 gaaacggttccacctctgaa 1665
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>ref|XM_876943.1| PREDICTED: Bos taurus similar to ubiquitin specific protease 52,
            transcript variant 8 (LOC538820), mRNA
          Length = 4881

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  gaaacggttccacctctgaa 179
            ||||||||||||||||||||
Sbjct: 2063 gaaacggttccacctctgaa 2044
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>ref|XM_582990.2| PREDICTED: Bos taurus similar to ubiquitin specific protease 52,
            transcript variant 1 (LOC538820), mRNA
          Length = 5012

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  gaaacggttccacctctgaa 179
            ||||||||||||||||||||
Sbjct: 2063 gaaacggttccacctctgaa 2044
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>ref|XM_865640.1| PREDICTED: Bos taurus similar to ubiquitin specific protease 52,
            transcript variant 3 (LOC538820), mRNA
          Length = 4887

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  gaaacggttccacctctgaa 179
            ||||||||||||||||||||
Sbjct: 2063 gaaacggttccacctctgaa 2044
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>ref|XM_862063.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 5 (SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin A5) (Sucrose
            nonfermenting protein 2 homolog) (hSNF2H)..., transcript
            variant 6 (LOC475451), mRNA
          Length = 3969

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   agagtttaatatatgtatatcctt 111
            |||||||||||||| |||||||||
Sbjct: 1500 agagtttaatatatctatatcctt 1477
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>ref|XM_862054.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 5 (SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin A5) (Sucrose
            nonfermenting protein 2 homolog) (hSNF2H)..., transcript
            variant 5 (LOC475451), mRNA
          Length = 3969

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   agagtttaatatatgtatatcctt 111
            |||||||||||||| |||||||||
Sbjct: 1500 agagtttaatatatctatatcctt 1477
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>ref|XM_862045.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 5 (SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin A5) (Sucrose
            nonfermenting protein 2 homolog) (hSNF2H)..., transcript
            variant 4 (LOC475451), mRNA
          Length = 3921

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   agagtttaatatatgtatatcctt 111
            |||||||||||||| |||||||||
Sbjct: 1500 agagtttaatatatctatatcctt 1477
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>ref|XM_862038.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 5 (SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin A5) (Sucrose
            nonfermenting protein 2 homolog) (hSNF2H)..., transcript
            variant 3 (LOC475451), mRNA
          Length = 3903

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   agagtttaatatatgtatatcctt 111
            |||||||||||||| |||||||||
Sbjct: 1500 agagtttaatatatctatatcctt 1477
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>ref|XM_862026.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 5 (SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin A5) (Sucrose
            nonfermenting protein 2 homolog) (hSNF2H)..., transcript
            variant 2 (LOC475451), mRNA
          Length = 3939

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   agagtttaatatatgtatatcctt 111
            |||||||||||||| |||||||||
Sbjct: 1482 agagtttaatatatctatatcctt 1459
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>ref|XM_532676.2| PREDICTED: Canis familiaris similar to SWI/SNF related matrix
            associated actin dependent regulator of chromatin
            subfamily A member 5 (SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin A5) (Sucrose
            nonfermenting protein 2 homolog) (hSNF2H)..., transcript
            variant 1 (LOC475451), mRNA
          Length = 4220

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 88   agagtttaatatatgtatatcctt 111
            |||||||||||||| |||||||||
Sbjct: 1763 agagtttaatatatctatatcctt 1740
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>gb|AC107761.9| Mus musculus chromosome 7, clone RP23-184M3, complete sequence
          Length = 216757

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    atttttacaagttttataca 157
              ||||||||||||||||||||
Sbjct: 144501 atttttacaagttttataca 144520
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>emb|AL158214.33| Human DNA sequence from clone RP11-543E8 on chromosome 1q42.2-43
             Contains a novel gene, a ribosomal protein S24 (RPS24)
             pseudogene, the COG2 gene for component of oligomeric
             golgi complex 2, the 3' end of the AGT gene for
             angiotensinogen (serine (or cysteine) proteinase
             inhibitor,clade A (alpha-1 antiproteinase, antitrypsin),
             member 8) and a CpG island, complete sequence
          Length = 181175

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    agaatttttcctttacaaat 50
             ||||||||||||||||||||
Sbjct: 73771 agaatttttcctttacaaat 73752
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     tcctggcagctcggccgatc 291
               ||||||||||||||||||||
Sbjct: 2476477 tcctggcagctcggccgatc 2476496
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>emb|CR318645.2| Zebrafish DNA sequence from clone CH211-161F7 in linkage group 11,
              complete sequence
          Length = 138050

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    caatctgcaattaacttgcc 327
              ||||||||||||||||||||
Sbjct: 111983 caatctgcaattaacttgcc 111964
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>gb|AY091139.1| Arabidopsis thaliana
          Length = 4316

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   aagagtttaatatatgtata 106
            ||||||||||||||||||||
Sbjct: 4180 aagagtttaatatatgtata 4161
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>gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 154016

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    ttcctttacaaatttgaaagaaag 61
             |||||||||||| |||||||||||
Sbjct: 83797 ttcctttacaaaattgaaagaaag 83774
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>emb|BX322565.11| Zebrafish DNA sequence from clone CH211-262K18 in linkage group 24,
              complete sequence
          Length = 158981

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 16     ttctattaaaaggagagaattttt 39
              |||||||||||||||||| |||||
Sbjct: 155386 ttctattaaaaggagagatttttt 155363
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>emb|BX294098.11| Zebrafish DNA sequence from clone CH211-254P12 in linkage group 24,
             complete sequence
          Length = 152545

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    ttctattaaaaggagagaattttt 39
             |||||||||||||||||| |||||
Sbjct: 36610 ttctattaaaaggagagatttttt 36633
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>emb|BX510349.5| Zebrafish DNA sequence from clone CH211-69E13 in linkage group 7,
             complete sequence
          Length = 152064

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 166   gttccacctctgaaggcactggga 189
             |||||||||||||| |||||||||
Sbjct: 50266 gttccacctctgaatgcactggga 50243
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>gb|AC016153.21| Homo sapiens 12 BAC RP11-1022D13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 11001

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   ttttcctttacaaatttgaa 55
            ||||||||||||||||||||
Sbjct: 1407 ttttcctttacaaatttgaa 1426
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>gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 182226

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     ttttcctttacaaatttgaa 55
              ||||||||||||||||||||
Sbjct: 181621 ttttcctttacaaatttgaa 181640
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>dbj|AB078516.1| Arabidopsis thaliana genomic DNA, chromosome 1, P1 clone:R18I, complete
             sequence
          Length = 83408

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    aagagtttaatatatgtata 106
             ||||||||||||||||||||
Sbjct: 29378 aagagtttaatatatgtata 29359
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>gb|AC005386.1|AC005386 citb_57_l_21, complete sequence
          Length = 196361

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     agaatttttcctttacaaat 50
              ||||||||||||||||||||
Sbjct: 166878 agaatttttcctttacaaat 166859
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>emb|BX255913.8| Zebrafish DNA sequence from clone DKEY-85N7 in linkage group 20,
             complete sequence
          Length = 248581

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    gaatttttcctttacaaatt 51
             ||||||||||||||||||||
Sbjct: 75147 gaatttttcctttacaaatt 75166
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>emb|BX294095.13| Zebrafish DNA sequence from clone CH211-248L17 in linkage group 24,
              complete sequence
          Length = 147604

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 16     ttctattaaaaggagagaattttt 39
              |||||||||||||||||| |||||
Sbjct: 134174 ttctattaaaaggagagatttttt 134151
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>emb|Z36028.1|SCYBR159W S.cerevisiae chromosome II reading frame ORF YBR159w
          Length = 1882

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 ggcccttctggaatttcaag 351
           ||||||||||||||||||||
Sbjct: 184 ggcccttctggaatttcaag 165
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>emb|Z36027.1|SCYBR158W S.cerevisiae chromosome II reading frame ORF YBR158w
          Length = 4374

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  ggcccttctggaatttcaag 351
            ||||||||||||||||||||
Sbjct: 4069 ggcccttctggaatttcaag 4050
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>gb|DQ332743.1| Synthetic construct Saccharomyces cerevisiae clone FLH113412.01X
           YHL039W gene, complete sequence
          Length = 1758

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 27  ggagagaatttttcctttacaaat 50
           |||||||||||||| |||||||||
Sbjct: 134 ggagagaatttttcgtttacaaat 111
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>dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22D23, TM0409,
             complete sequence
          Length = 93754

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aatttttcctttacaaattt 52
             ||||||||||||||||||||
Sbjct: 85750 aatttttcctttacaaattt 85731
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>gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosome 10, complete sequence
          Length = 200663

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 38     ttcctttacaaatttgaaagaaag 61
              |||||||||||| |||||||||||
Sbjct: 110010 ttcctttacaaaattgaaagaaag 109987
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>gb|AC161238.7| Mus musculus chromosome 19, clone RP24-288C19, complete sequence
          Length = 193445

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    ctctcagctctcagcgtact 245
              ||||||||||||||||||||
Sbjct: 126997 ctctcagctctcagcgtact 126978
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>emb|AL808120.9| Mouse DNA sequence from clone RP23-418E2 on chromosome X, complete
            sequence
          Length = 148328

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 26   aggagagaatttttccttta 45
            ||||||||||||||||||||
Sbjct: 4302 aggagagaatttttccttta 4321
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>gb|U11583.2|YSCH9196 Saccharomyces cerevisiae chromosome VIII cosmid 9196
          Length = 55070

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    ggagagaatttttcctttacaaat 50
             |||||||||||||| |||||||||
Sbjct: 21913 ggagagaatttttcgtttacaaat 21890
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>gb|AY067301.1| Schmidtea mediterranea clone H.34.10f unknown mRNA sequence
          Length = 640

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 agatttttacaagttttata 155
           ||||||||||||||||||||
Sbjct: 199 agatttttacaagttttata 218
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>gb|AC133964.2| Homo sapiens BAC clone RP11-288B20 from 4, complete sequence
          Length = 32393

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  ttttacaagttttatacaga 159
            ||||||||||||||||||||
Sbjct: 8405 ttttacaagttttatacaga 8386


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,978,804
Number of Sequences: 3902068
Number of extensions: 3978804
Number of successful extensions: 83696
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83547
Number of HSP's gapped (non-prelim): 149
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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