ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55g11 |
|---|---|
| Clone Library Name | barley_pub |
>RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 331 Score = 30.0 bits (66), Expect = 1.7 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +2 Query: 56 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIF 196 P R P+L P + T RK P R I RAR + +IF Sbjct: 47 PSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIF 93
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 29.6 bits (65), Expect = 2.2 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +2 Query: 74 PALIPSPTVLTTSTNRKRKQPATTNNT 154 P+++PS +TT+ RKRK ++T+N+ Sbjct: 814 PSMVPSYMAMTTAAKRKRKLTSSTSNS 840
>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2498 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2496 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>FA53B_HUMAN (Q14153) Protein FAM53B| Length = 422 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +2 Query: 56 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 181 P ++TPA P ++ +R R QP N+ + ++R RP Sbjct: 244 PSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRP 285
>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2485 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 28.5 bits (62), Expect = 4.9 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +2 Query: 23 AYLI*SRYKITPLRS---TTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPR 184 A ++ SR K TP+ S TTP + PT S+ R TN + P ++ R + Sbjct: 882 AGVVPSRVKATPMPSRPSTTPFIDKKPTSAKPSSTTPRLSRLATNTSAPDLKNVRSK 938
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = +2 Query: 59 LRSTTPALIPSPTVLTTSTN 118 L S T A +P PTV+TTSTN Sbjct: 575 LESDTIADLPDPTVVTTSTN 594
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 8.3 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 152 CCWLLLAVFFFCS 114 CCW+L + F FCS Sbjct: 3646 CCWILASTFLFCS 3658
>FA53B_MOUSE (Q8BGR5) Protein FAM53B| Length = 422 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 56 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 181 P ++TPA P ++ R R QP N+ + ++R RP Sbjct: 245 PSANSTPASTPELARRSSGLARSRSQPCVLNDKKIGVKRRRP 286
>PET_ECOLI (O68900) Serine protease pet precursor (EC 3.4.21.-)| (Plasmid-encoded toxin pet) Length = 1295 Score = 27.7 bits (60), Expect = 8.3 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 28 FNMIPIQDYSTALNNSSAYSI--SYRPNYEYEQKKKTASNNQQH 153 F +P+ D+S+A N +A SI +Y + K K+++N Q + Sbjct: 94 FPALPVPDFSSATANGAATSIGGAYAVTVAHNAKNKSSANYQTY 137
>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2493 Score = 27.7 bits (60), Expect = 8.3 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW H D+ + + S V+GCCW F Sbjct: 391 RWAREHRADLEDEKGLGVRERSLVMGCCWAF 421
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 27.7 bits (60), Expect = 8.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 74 PALIPSPTVLTTSTNRKRKQPATTNNTRP 160 P++ P+P +L +T+++ + P TT + RP Sbjct: 436 PSVPPAPLLLAETTHKEEEDPTTTLDHRP 464
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 8.3 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 152 CCWLLLAVFFFCS 114 CCW+L + F FCS Sbjct: 3650 CCWILASTFLFCS 3662
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 27.7 bits (60), Expect = 8.3 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 53 TPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNT 154 T STTP +PT TTST + +TT T Sbjct: 218 TSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTT 251 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,391,948 Number of Sequences: 219361 Number of extensions: 540187 Number of successful extensions: 2276 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1995 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2245 length of database: 80,573,946 effective HSP length: 53 effective length of database: 68,947,813 effective search space used: 1654747512 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
