>UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific processing
            protease 8) (Deubiquitinating enzyme 8) (hUBPy)
          Length = 1118

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +2

Query: 47   QYKSSRICIT-HKRNTTISQ---ITQPIRSTNKCTYMMKLLLFS 166
            Q+KS+  C+T HK++ T      ++ P+ ST+KCT    L LFS
Sbjct: 929  QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 972

>ENDR_PAEPO (P27871) Probable HTH-type transcriptional regulator endR|
          Length = 340

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 73  YTQKKYHYQSNNTTNKINQQM----YIYDEAAALLHQ 171
           + QK+Y+Y S NT  KI Q +    YI +E A  L Q
Sbjct: 22  FLQKRYNYMSENTKKKIEQAIEDLSYIPNEVARSLKQ 58

>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific-processing
            protease 8) (Deubiquitinating enzyme 8) (mUBPy)
          Length = 1080

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 47   QYKSSRICITHKRNTTISQ----ITQPIRSTNKCTYMMKLLLFS 166
            Q+KS+  C+T +R +   +    ++ P+ ST+KCT    L LFS
Sbjct: 891  QFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 934

>VID21_KLULA (Q6CMB8) Chromatin modification-related protein VID21|
          Length = 1005

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 23/105 (21%)
 Frame = +1

Query: 40  LVPIQVK*DMYYTQKKYHY-----------------------QSNNTTNKINQQMYIYDE 150
           LVP+  +  M+Y  ++ HY                               INQ  Y +D 
Sbjct: 650 LVPLSKRRGMFYGNRRSHYLRPPNAPSLRYLKFRTPTIWLPEDDQELVKNINQYAYNWDL 709

Query: 151 AAALLHQYSKEKILRND*RIRGTSCGDKTRARDECF*IFDLMGPR 285
            ++ +  + K + + N  R     C ++    +E F I D+ GP+
Sbjct: 710 ISSQMSNHHKREYVSNIERRTPWQCFERFVQLNEKFNIADMKGPK 754


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,526,781
Number of Sequences: 219361
Number of extensions: 671220
Number of successful extensions: 1724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)