ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, co... 44 0.17
2emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on... 42 0.66
3emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in... 40 2.6
4emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in... 40 2.6
5gb|AC108799.9| Mus musculus, clone RP23-119G12, complete sequence 40 2.6
6emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in l... 40 2.6
7emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 40 2.6
8emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in ... 40 2.6
9emb|AJ291569.1|HTR291569 Homalia trichomanoides mitochondrial pa... 40 2.6
10emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in ... 40 2.6
11emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 i... 40 2.6
12emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in ... 40 2.6
13emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, ... 40 2.6
14emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 i... 40 2.6
15gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, comple... 40 2.6
16gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N1... 40 2.6
17gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 2.6
18emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in... 40 2.6
19emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, c... 40 2.6
20dbj|AP002496.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 2.6
21emb|AL953893.17| Zebrafish DNA sequence from clone DKEY-60B12, c... 40 2.6
22emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in ... 40 2.6

>emb|BX248137.9| Zebrafish DNA sequence from clone DKEY-19L19, complete sequence
          Length = 209896

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 59     cattacattcattttacaacaaatgt 84
              |||| |||||||||||||||||||||
Sbjct: 176545 catttcattcattttacaacaaatgt 176520



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>emb|CR940310.6| M.truncatula DNA sequence from clone MTH2-5D8 on chromosome 3, complete
             sequence
          Length = 121689

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   gaaaaacacatacatgattctacag 138
             ||||||||||| |||||||||||||
Sbjct: 37638 gaaaaacacattcatgattctacag 37614



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>emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in linkage group 1, complete
              sequence
          Length = 257504

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ttacagtacagcattacatt 67
              ||||||||||||||||||||
Sbjct: 229746 ttacagtacagcattacatt 229765



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>emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in linkage group 5,
             complete sequence
          Length = 158289

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttacagtacagcattacatt 67
             ||||||||||||||||||||
Sbjct: 45457 ttacagtacagcattacatt 45438



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>gb|AC108799.9| Mus musculus, clone RP23-119G12, complete sequence
          Length = 228349

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   tgccttttttagcatcaacaaaaa 176
             ||||||| ||||||||||||||||
Sbjct: 88931 tgcctttgttagcatcaacaaaaa 88908



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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete
              sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ttacagtacagcattacatt 67
              ||||||||||||||||||||
Sbjct: 121961 ttacagtacagcattacatt 121980



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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ttacagtacagcattacatt 67
              ||||||||||||||||||||
Sbjct: 123959 ttacagtacagcattacatt 123940



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>emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in linkage group 3,
             complete sequence
          Length = 92147

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttacagtacagcattacatt 67
             ||||||||||||||||||||
Sbjct: 80765 ttacagtacagcattacatt 80746



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>emb|AJ291569.1|HTR291569 Homalia trichomanoides mitochondrial partial nad5 gene for NADH
            dehydrogenase subunit 5, exons 1-2
          Length = 1933

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 151  tttgccttttttagcatcaacaaa 174
            |||| |||||||||||||||||||
Sbjct: 1825 tttgacttttttagcatcaacaaa 1848



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>emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in linkage group 3, complete
              sequence
          Length = 116813

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ttacagtacagcattacatt 67
              ||||||||||||||||||||
Sbjct: 103428 ttacagtacagcattacatt 103409



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>emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 in linkage group 13,
              complete sequence
          Length = 205873

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    caatgcatttgcctttttta 163
              ||||||||||||||||||||
Sbjct: 163844 caatgcatttgcctttttta 163863



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>emb|BX000435.21| Zebrafish DNA sequence from clone DKEY-12L8 in linkage group 1, complete
              sequence
          Length = 201673

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ttacagtacagcattacatt 67
              ||||||||||||||||||||
Sbjct: 153044 ttacagtacagcattacatt 153025



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>emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, complete sequence
          Length = 178457

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caatgcatttgcctttttta 163
             ||||||||||||||||||||
Sbjct: 27275 caatgcatttgcctttttta 27294



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>emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 in linkage group 14,
              complete sequence
          Length = 214178

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ttacagtacagcattacatt 67
              ||||||||||||||||||||
Sbjct: 145384 ttacagtacagcattacatt 145403



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>gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, complete sequence
          Length = 147390

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 157    ttttttagcatcaacaaaaatcat 180
              |||||||||||| |||||||||||
Sbjct: 114908 ttttttagcatctacaaaaatcat 114931



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>gb|AC008394.3|AC008394 Homo sapiens chromosome 5 clone CTC_242N15, complete sequence
          Length = 171545

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    ttctacagctgcacaatgcatttg 154
              |||||||||||||||||| |||||
Sbjct: 157682 ttctacagctgcacaatgtatttg 157659



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 60     attacattcattttacaacaaatg 83
              |||||||||||||||||| |||||
Sbjct: 381838 attacattcattttacaagaaatg 381861



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>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19,
             complete sequence
          Length = 166128

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttacagtacagcattacatt 67
             ||||||||||||||||||||
Sbjct: 90961 ttacagtacagcattacatt 90942



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>emb|BX004885.4| Zebrafish DNA sequence from clone CH211-103L6, complete sequence
          Length = 187201

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ttacagtacagcattacatt 67
             ||||||||||||||||||||
Sbjct: 39594 ttacagtacagcattacatt 39613



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>dbj|AP002496.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2378D21, complete
             sequence
          Length = 110702

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   tagcatcaacaaaaatcatg 181
             ||||||||||||||||||||
Sbjct: 77051 tagcatcaacaaaaatcatg 77032



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>emb|AL953893.17| Zebrafish DNA sequence from clone DKEY-60B12, complete sequence
          Length = 216749

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gcatcaacaaaaatcatgtg 183
             ||||||||||||||||||||
Sbjct: 55852 gcatcaacaaaaatcatgtg 55833



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>emb|CR762424.33| Zebrafish DNA sequence from clone RP71-52E8 in linkage group 22,
             complete sequence
          Length = 178229

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ttacagtacagcattacatt 67
             ||||||||||||||||||||
Sbjct: 16976 ttacagtacagcattacatt 16995


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,008,835
Number of Sequences: 3902068
Number of extensions: 2008835
Number of successful extensions: 151007
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150892
Number of HSP's gapped (non-prelim): 115
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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