ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
5dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
8emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 44 0.26
9emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.26
10emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.26
11ref|XM_509808.1| PREDICTED: Pan troglodytes similar to hypotheti... 42 1.0
12gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosom... 42 1.0
13gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, compl... 42 1.0
14gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete... 42 1.0
15gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete se... 42 1.0
16ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 4.1
17ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding ca... 40 4.1
18ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 4.1
19gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRN... 40 4.1
20ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 4.1
21ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-bind... 40 4.1
22ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 4.1
23emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i... 40 4.1
24gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, c... 40 4.1
25gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, co... 40 4.1
26emb|BX248498.5| Zebrafish DNA sequence from clone CH211-241P24, ... 40 4.1
27emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in ... 40 4.1
28dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.1
29emb|BX294179.5| Zebrafish DNA sequence from clone DKEY-253G9, co... 40 4.1

>gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1607_F09,
             complete sequence
          Length = 95755

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 274   ggcacctcgtcgatgtgctgccatcc 299
             ||||||||||||||||||||| ||||
Sbjct: 29872 ggcacctcgtcgatgtgctgcaatcc 29847



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
             complete sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 109   aaccaataagatcaaccaacaa 130
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 109   aaccaataagatcaaccaacaa 130
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 274     ggcacctcgtcgatgtgctgccatcc 299
               ||||||||||||||||||||| ||||
Sbjct: 2462850 ggcacctcgtcgatgtgctgcaatcc 2462825



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>dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C10, full
            insert sequence
          Length = 2109

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 274  ggcacctcgtcgatgtgctgccatcc 299
            ||||||||||||||||||||| ||||
Sbjct: 1789 ggcacctcgtcgatgtgctgcaatcc 1814



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 109   aaccaataagatcaaccaacaa 130
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 109   aaccaataagatcaaccaacaa 130
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 109   aaccaataagatcaaccaacaa 130
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 109   aaccaataagatcaaccaacaa 130
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161808

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 109   aaccaataagatcaaccaacaa 130
             ||||||||||||||||||||||
Sbjct: 13404 aaccaataagatcaaccaacaa 13425



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>ref|XM_509808.1| PREDICTED: Pan troglodytes similar to hypothetical protein
           (LOC452752), mRNA
          Length = 4056

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 2   acagatcatcattttttcaaa 22
           |||||||||||||||||||||
Sbjct: 744 acagatcatcattttttcaaa 724



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>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete
            sequence
          Length = 162676

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 113  aataagatcaaccaacaaatgtaca 137
            ||||||||||||||||||| |||||
Sbjct: 3527 aataagatcaaccaacaaaggtaca 3551



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>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence
          Length = 182661

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 113   aataagatcaaccaacaaatgtaca 137
             ||||||||||||||||||| |||||
Sbjct: 52926 aataagatcaaccaacaaaggtaca 52902



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>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 254   ttctagatatttgatttgatggcac 278
             ||||||||||| |||||||||||||
Sbjct: 94586 ttctagatattggatttgatggcac 94610



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>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence
          Length = 165682

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    atcaaccaacaaatgtacata 139
              |||||||||||||||||||||
Sbjct: 131886 atcaaccaacaaatgtacata 131866



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>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 3
           (LOC529923), mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 tgaagctgctgctcttctcc 164
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 2
           (LOC529923), mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 tgaagctgctgctcttctcc 164
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 4
           (LOC529923), mRNA
          Length = 2340

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 tgaagctgctgctcttctcc 164
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRNA (cDNA clone
            MGC:81517 IMAGE:6637322), complete cds
          Length = 3425

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   actgctgttgctcgttccaa 47
            ||||||||||||||||||||
Sbjct: 3043 actgctgttgctcgttccaa 3024



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>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 4 (LOC477456), mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 tgaagctgctgctcttctcc 164
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 1 (LOC477456), mRNA
          Length = 2376

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 tgaagctgctgctcttctcc 164
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 3 (LOC477456), mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 tgaagctgctgctcttctcc 164
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
              complete sequence
          Length = 142908

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    tctagatatttgatttgatg 274
              ||||||||||||||||||||
Sbjct: 119377 tctagatatttgatttgatg 119358



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>gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, complete sequence
          Length = 87833

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   atgaagctgctgctcttctc 163
             ||||||||||||||||||||
Sbjct: 84973 atgaagctgctgctcttctc 84954



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>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   atgaagctgctgctcttctc 163
             ||||||||||||||||||||
Sbjct: 46103 atgaagctgctgctcttctc 46084



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>emb|BX248498.5| Zebrafish DNA sequence from clone CH211-241P24, complete sequence
          Length = 171348

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   tattccaaggaaaagatattaaga 193
             ||||||||| ||||||||||||||
Sbjct: 82356 tattccaagaaaaagatattaaga 82379



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>emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in linkage group 20,
             complete sequence
          Length = 116609

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   aggaaaagatattaagaaacgact 200
             ||||||||| ||||||||||||||
Sbjct: 35698 aggaaaagaaattaagaaacgact 35675



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>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
              sequence
          Length = 186656

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    cttctagatatttgatttga 272
              ||||||||||||||||||||
Sbjct: 110819 cttctagatatttgatttga 110800



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>emb|BX294179.5| Zebrafish DNA sequence from clone DKEY-253G9, complete sequence
          Length = 205587

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   tattccaaggaaaagatattaaga 193
             ||||||||| ||||||||||||||
Sbjct: 44005 tattccaagaaaaagatattaaga 44028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,772,310
Number of Sequences: 3902068
Number of extensions: 3772310
Number of successful extensions: 78072
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77888
Number of HSP's gapped (non-prelim): 184
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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