ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55g06 |
|---|---|
| Clone Library Name | barley_pub |
>CP242_PIG (P79402) Cytochrome P450 2C42 (EC 1.14.14.1) (CYPIIC42) (Fragment)| Length = 327 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/39 (46%), Positives = 23/39 (58%) Frame = -2 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 2 +GTT+L S TSV Y K P+P +F HF+D S F Sbjct: 220 KGTTILTSL--TSVLYDCKAFPNPEVFDPGHFLDESGNF 256
>CR1EA_BACTX (Q57458) Pesticidal crystal protein cry1Ea (Insecticidal| delta-endotoxin CryIE(a)) (Crystaline entomocidal protoxin) (133 kDa crystal protein) Length = 1171 Score = 30.8 bits (68), Expect = 0.82 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Frame = +3 Query: 33 TTNRTGLGSNLTEYETDV*THDS----NTVVPSVLTRIPSCKG 149 T R+ +N+T T V TH S NT+ P ++T+IP KG Sbjct: 430 TLTRSLYNTNITSLPTFVWTHHSATNTNTINPDIITQIPLVKG 472
>CP2CJ_HUMAN (P33261) Cytochrome P450 2C19 (EC 1.14.13.80) ((R)-limonene| 6-monooxygenase) (EC 1.14.13.48) ((S)-limonene 6-monooxygenase) (EC 1.14.13.49) ((S)-limonene 7-monooxygenase) (CYPIIC19) (P450-11A) (Mephenytoin 4-hydroxylase) (CYPIIC17) (P450-254C Length = 490 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -2 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVD 17 +GTT+L S TSV + K P+P +F +HF+D Sbjct: 383 KGTTILTSL--TSVLHDNKEFPNPEMFDPRHFLD 414
>SYA_LEGPA (Q5X4B7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 860 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Frame = -2 Query: 232 AVVEVVKNTDSGGKPCIVLLEHLFA*ESPLQEGILVSTEGT-TVLESCV*TSVSYSVKL- 59 A+ ++ +N D V+ +H+ + + +G+L S EG VL + +V + KL Sbjct: 255 AIAQLGQNIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGYVLRRIIRRAVRHGNKLG 314 Query: 58 LPSPVLF-VVKHFVDI 14 LPSP F +V+ +D+ Sbjct: 315 LPSPFFFKLVQPLIDV 330
>CP239_MOUSE (P56656) Cytochrome P450 2C39 (EC 1.14.14.1) (CYPIIC39)| Length = 490 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -2 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 2 +GTTV+ S TSV + K P+P LF HF+D + F Sbjct: 383 KGTTVVTSL--TSVLHDSKEFPNPELFDPGHFLDANGNF 419
>CP2CI_HUMAN (P33260) Cytochrome P450 2C18 (EC 1.14.14.1) (CYPIIC18)| (P450-6B/29C) Length = 490 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = -2 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 2 +GTT++ S TSV ++ K P+P +F HF+D S F Sbjct: 383 KGTTIITSL--TSVLHNDKEFPNPEMFDPGHFLDKSGNF 419
>RECF_MANSM (Q65VB6) DNA replication and repair protein recF| Length = 360 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/46 (28%), Positives = 20/46 (43%) Frame = +2 Query: 218 NFYNCKGSLF*LAQSNAAITSHTCQHNPLLVWSLSFEKTGHTV*SW 355 NF++ +L L + A + T +N L W + K H V W Sbjct: 147 NFHSAWSALHRLLKQRNAALNQTYDYNMLKPWDMELAKLAHQVSQW 192
>CP238_MOUSE (P56655) Cytochrome P450 2C38 (EC 1.14.14.1) (CYPIIC38)| Length = 490 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -2 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 2 +GTTV+ S TSV + K P+P +F HF+D + F Sbjct: 383 KGTTVVTSL--TSVLHDSKEFPNPEMFDPGHFLDANGNF 419
>RS17E_SULAC (Q4JAX5) 30S ribosomal protein S17e| Length = 82 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 350 IRQYVQSSQRKVTKLVMGYVDKYVKL 273 + +YV S +KV + GY+ +YVK+ Sbjct: 35 VDEYVNVSSKKVKNRIAGYLTRYVKI 60
>NTNG1_MOUSE (Q8R4G0) Netrin G1 precursor (Laminet-1)| Length = 539 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 99 SNTVVPSVLTRIPSCKGLSHANRCS 173 +NT +PS+ + I +C+ H+NRCS Sbjct: 351 ANTCIPSI-SSIGNCECFGHSNRCS 374
>NTNG1_HUMAN (Q9Y2I2) Netrin G1 precursor (Laminet-1)| Length = 539 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 99 SNTVVPSVLTRIPSCKGLSHANRCS 173 +NT +PS+ + I +C+ H+NRCS Sbjct: 351 ANTCIPSI-SSIGNCECFGHSNRCS 374
>GCR_TUPGB (Q95267) Glucocorticoid receptor (GR)| Length = 776 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = +1 Query: 67 PNMKLMFKHMILIQSFPQYLQ----EYLLVKDFLMQIDVPRE 180 P M KHM+ + S Q LQ EYL +K L+ VP+E Sbjct: 636 PFMYDQCKHMLFVSSELQRLQVSYEEYLCMKTLLLLSSVPKE 677
>CP2C9_HUMAN (P11712) Cytochrome P450 2C9 (EC 1.14.13.80) ((R)-limonene| 6-monooxygenase) (EC 1.14.13.48) ((S)-limonene 6-monooxygenase) (EC 1.14.13.49) ((S)-limonene 7-monooxygenase) (CYPIIC9) (P450 PB-1) (P450 MP-4/MP-8) (S-mephenytoin 4-hydroxylase) (P- Length = 490 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVD 17 +GTT+L S TSV + K P+P +F HF+D Sbjct: 383 KGTTILISL--TSVLHDNKEFPNPEMFDPHHFLD 414
>GCR_RAT (P06536) Glucocorticoid receptor (GR)| Length = 795 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = +1 Query: 67 PNMKLMFKHMILIQSFPQYLQ----EYLLVKDFLMQIDVPRE 180 P M KHM+ + S Q LQ EYL +K L+ VP+E Sbjct: 655 PCMYDQCKHMLFVSSELQRLQVSYEEYLCMKTLLLLSSVPKE 696
>CP2CU_RABIT (Q29510) Cytochrome P450 2C30 (EC 1.14.14.1) (CYPIIC30)| Length = 489 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = -2 Query: 118 EGTTVLESCV*TSVSYSVKLLPSPVLFVVKHFVDISFPF 2 +GT +L S TSV Y K P+P F HF+D S F Sbjct: 382 KGTHILPSL--TSVLYDEKEFPNPEKFDPGHFLDASGNF 418
>BNC1_HUMAN (Q01954) Zinc finger protein basonuclin-1| Length = 994 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = +3 Query: 102 NTVVPSVLTRIPSCKGLSHANRCS---KRTIHGLPPESVFFTTSTTAKEVSSD 251 N + P+++ +P L + S K+ +HG P+S F T+S+T +V D Sbjct: 250 NPLPPALIGSLPEQYMLEQGHDQSQDPKQEVHGPFPDSSFLTSSSTPFQVEKD 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,445,391 Number of Sequences: 219361 Number of extensions: 872787 Number of successful extensions: 1904 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1884 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1903 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
