>dbj|AK100534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N06, full
            insert sequence
          Length = 3665

 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 270  ctataacttcacatacttgtcaacataacccattactagtttggtcactttcctttgaga 329
            ||||| ||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct: 3266 ctatagcttcacatatttgtcaacatagcccattacaagtttggtcactttcttttgaga 3207

                                                             
Query: 330  agactggacatactgtctaatcttggctggtgttttcggtatatgattg 378
             ||||||||||||||  | ||||||||||| ||||| || |||||||||
Sbjct: 3206 ggactggacatactgcttgatcttggctggcgtttttggaatatgattg 3158

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                           
Query: 299     ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 358
               ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 5975975 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 5976034

                                   
Query: 359     gtgttttcggtatatgattg 378
               | ||||| || |||||||||
Sbjct: 5976035 gcgtttttggaatatgattg 5976054

>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
              complete sequence
          Length = 128535

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                          
Query: 299    ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 358
              ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 125597 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 125656

                                  
Query: 359    gtgttttcggtatatgattg 378
              | ||||| || |||||||||
Sbjct: 125657 gcgtttttggaatatgattg 125676

>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
             complete sequence
          Length = 111961

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 299   ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 358
             ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 34510 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 34569

                                 
Query: 359   gtgttttcggtatatgattg 378
             | ||||| || |||||||||
Sbjct: 34570 gcgtttttggaatatgattg 34589

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                           
Query: 299     ccattactagtttggtcactttcctttgagaagactggacatactgtctaatcttggctg 358
               ||||||| ||||||||||||||| ||||||| ||||||||||||||  | ||||||||||
Sbjct: 5975188 ccattacaagtttggtcactttcttttgagaggactggacatactgcttgatcttggctg 5975247

                                   
Query: 359     gtgttttcggtatatgattg 378
               | ||||| || |||||||||
Sbjct: 5975248 gcgtttttggaatatgattg 5975267

>gb|AY110799.1| Zea mays CL4694_1 mRNA sequence
          Length = 761

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                       
Query: 276 cttcacatacttgtcaacataacccattactagtttggtcactttcctttgagaagactg 335
           ||||||||||||||| ||||| |||||||||| ||||||||| |||||||| || || ||
Sbjct: 249 cttcacatacttgtcgacataccccattactaatttggtcaccttcctttgggaggattg 190

                                     
Query: 336 gacatactgtctaatcttggctggtg 361
            ||||| ||| |||||||||| ||||
Sbjct: 189 tacataatgtttaatcttggcaggtg 164

>ref|NM_113597.2| Arabidopsis thaliana unknown protein AT3G26850 transcript variant
            AT3G26850.1 mRNA, complete cds
          Length = 1700

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 280  acatacttgtcaacataacccattactagtttggt 314
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1141 acatacttgtctacataacccataaccagtttggt 1107

>ref|NM_202639.1| Arabidopsis thaliana unknown protein AT3G26850 transcript variant
            AT3G26850.2 mRNA, complete cds
          Length = 1257

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 280  acatacttgtcaacataacccattactagtttggt 314
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1141 acatacttgtctacataacccataaccagtttggt 1107

>gb|BT015404.1| Arabidopsis thaliana At3g26850 gene, complete cds
          Length = 798

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 280 acatacttgtcaacataacccattactagtttggt 314
           ||||||||||| ||||||||||| || ||||||||
Sbjct: 788 acatacttgtctacataacccataaccagtttggt 754

>gb|AY056130.1| Arabidopsis thaliana unknown protein (At3g26850) mRNA, complete cds
          Length = 1468

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 280  acatacttgtcaacataacccattactagtttggt 314
            ||||||||||| ||||||||||| || ||||||||
Sbjct: 1142 acatacttgtctacataacccataaccagtttggt 1108

>emb|BX825649.1|CNS0A6C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL53ZE12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 758

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 280 acatacttgtcaacataacccattactagtttggt 314
           ||||||||||| ||||||||||| || ||||||||
Sbjct: 438 acatacttgtctacataacccataaccagtttggt 404

>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence
          Length = 199569

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 144    aaaggactttctcatgcaaatagatg 169
              ||||||||||||||||||||| ||||
Sbjct: 195428 aaaggactttctcatgcaaattgatg 195403

>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence
          Length = 157375

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 144   aaaggactttctcatgcaaatagatg 169
             ||||||||||||||||||||| ||||
Sbjct: 41292 aaaggactttctcatgcaaattgatg 41317

>gb|AC015804.14| Homo sapiens chromosome 17, clone RP11-637C24, complete sequence
          Length = 200452

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 142    gtaaaggactttctcatgcaaa 163
              ||||||||||||||||||||||
Sbjct: 157305 gtaaaggactttctcatgcaaa 157326

>gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome 12, complete sequence
          Length = 194429

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 219    acttctacaactgcaaaggaagtctcttct 248
              |||| ||||| |||||||||||||||||||
Sbjct: 117316 acttgtacaagtgcaaaggaagtctcttct 117345

>gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, complete sequence
          Length = 203534

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 219    acttctacaactgcaaaggaagtctcttct 248
              |||| ||||| |||||||||||||||||||
Sbjct: 184862 acttgtacaagtgcaaaggaagtctcttct 184891

>emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, complete sequence
          Length = 178948

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 10    aagaaatatcaacaaagtgctt 31
             ||||||||||||||||||||||
Sbjct: 51025 aagaaatatcaacaaagtgctt 51046

>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5
          Length = 178420

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 144   aaaggactttctcatgcaaatagatg 169
             ||||||||||||||||||||| ||||
Sbjct: 42915 aaaggactttctcatgcaaattgatg 42940

>gb|U06670.1|MMU06670 Mus musculus very low density lipoprotein receptor mRNA, complete cds
          Length = 3283

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 11   agaaatatcaacaaagtgctt 31
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185

>gb|U28736.1| Caenorhabditis elegans cosmid F26A10, complete sequence
          Length = 38482

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   acttacaagaataccttcttg 142
             |||||||||||||||||||||
Sbjct: 29978 acttacaagaataccttcttg 29958

>ref|NM_013703.1| Mus musculus very low density lipoprotein receptor (Vldlr), mRNA
          Length = 3283

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 11   agaaatatcaacaaagtgctt 31
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185

>gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosome 14, complete sequence
          Length = 195425

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     atgtttaaacacatgattct 101
              ||||||||||||||||||||
Sbjct: 156209 atgtttaaacacatgattct 156190

>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence
          Length = 183140

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     tgtttaaacacatgattcta 102
              ||||||||||||||||||||
Sbjct: 133895 tgtttaaacacatgattcta 133876

>emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-001A02, complete sequence
          Length = 186572

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   cttcacatacttgtcaacat 295
             ||||||||||||||||||||
Sbjct: 60734 cttcacatacttgtcaacat 60715

>emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on chromosome 10, complete
             sequence
          Length = 139968

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   caaaggaagtctcttctgattggc 255
             ||||||| ||||||||||||||||
Sbjct: 84041 caaaggatgtctcttctgattggc 84064

>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 242500

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    tgtaaaggactttctcatgc 160
              ||||||||||||||||||||
Sbjct: 202855 tgtaaaggactttctcatgc 202836

>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the
             3' end of the Nipsnap1 gene for 4-nitrophenylphosphatase
             domain and non-neuronal SNAP25-like protein homolog 1 (C.
             elegans), a novel gene, a ribosomal protein L17 (Rpl17)
             pseudogene, the Nefh gene for neurofilament heavy
             polypeptide, the Ap1b1 gene for adaptor protein complex
             AP-1 beta 1 subunit, the gene for the ortholog of human
             RAS-related protein on chromosome 22, the gene for the
             ortholog of human growth arrest-specific 2 like 1 GAS2L1
             and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   ttctacaactgcaaaggaag 240
             ||||||||||||||||||||
Sbjct: 42628 ttctacaactgcaaaggaag 42609

>gb|AC011353.5| Homo sapiens chromosome 5 clone CTC-328A6, complete sequence
          Length = 143527

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     gaaagggaaagaaatatcaa 21
             ||||||||||||||||||||
Sbjct: 54556 gaaagggaaagaaatatcaa 54575

>gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 161874

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  cttcacatacttgtcaacat 295
            ||||||||||||||||||||
Sbjct: 4858 cttcacatacttgtcaacat 4839

>emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on chromosome 2, complete
              sequence
          Length = 194013

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     tgtttaaacacatgattcta 102
              ||||||||||||||||||||
Sbjct: 161820 tgtttaaacacatgattcta 161801

>emb|BX928740.16| Zebrafish DNA sequence from clone CH211-245J22 in linkage group 18,
             complete sequence
          Length = 154133

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    aaactgatgtttaaacacat 95
             ||||||||||||||||||||
Sbjct: 39008 aaactgatgtttaaacacat 38989

>emb|CT485784.2| RP43-026J01, complete sequence
          Length = 201375

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    cttcacatacttgtcaacat 295
              ||||||||||||||||||||
Sbjct: 169038 cttcacatacttgtcaacat 169019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,653,668
Number of Sequences: 3902068
Number of extensions: 3653668
Number of successful extensions: 106966
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106873
Number of HSP's gapped (non-prelim): 93
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)