>ATG3_NEUCR (Q7SDY2) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme atg-3)
          Length = 352

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 24  NSSREYGFAPSQSIYTVHVTYRKKEQSPGKYRTPCISNGEAL 149
           NS+R+   +  +  YT+++TY    + P  Y +  +SNG+ L
Sbjct: 165 NSNRQDNISTGKRTYTLYITYANAYKCPRMYMSGYLSNGQPL 206

>SMBT2_MOUSE (Q5DTW2) Scm-like with four MBT domains protein 2|
          Length = 938

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = -2

Query: 245 PHLVCVLPP-------TLSTSYCIPA*FMSHLC 168
           PH +C+LPP        ++  YC P  F++H C
Sbjct: 505 PHELCLLPPQMDSPVGAINAKYCCPQLFVNHRC 537

>SYM_CHLAB (Q5L5M3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 551

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -1

Query: 213 QHLLLHTGLIHEPPLCHYDSCLEPPHLRYKVFCICLETVPFFYRLHARCILIDLVQIRIL 34
           +H  LH   + EP L + D+C  P H+R  V         +   L  R I  DL      
Sbjct: 187 EHAFLHLERMVEPLLAYIDTCYLPEHIRKFV-------TDYIKNLRPRAITRDL------ 233

Query: 33  VMSWGFNPP 7
             SWG   P
Sbjct: 234 --SWGIPVP 240

>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
            membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 220  GGSTHTRWGPAGLQLIFASPTSGRPSCGGCT 312
            GG+TH+ +G       F +P S +P+ GG T
Sbjct: 1010 GGATHSAFGLKATASAFGAPASSQPAFGGST 1040

>VP4B_VARV (P33818) Major core protein P4b precursor (Virion core protein P4b)|
          Length = 644

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 259 QLIFASPTSGRPSCGGCTYPDTSGTHVTAISILDP 363
           +++FA P  G   C G T+ D+ GT+V   ++  P
Sbjct: 420 RVVFAPPNIGYGRCSGVTHIDSLGTNVMGSAVHSP 454

>TOLB_PASMU (Q9CM71) Protein tolB precursor|
          Length = 432

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
 Frame = +1

Query: 220 GGSTHTRWGPAGLQLIFASPTSGRP-------SCGGCTYPDTSG 330
           G +T   W P G  ++F S  SG P       S GG +   T G
Sbjct: 293 GNNTEPSWSPDGQTIVFTSDRSGSPQVYQMSASGGGASLVSTGG 336

>VP4B_VACCC (P20643) Major core protein P4b precursor (Virion core protein P4b)|
          Length = 644

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 259 QLIFASPTSGRPSCGGCTYPDTSGTHVTAISILDP 363
           +++FA P  G   C G T+ D  GT+V   ++  P
Sbjct: 420 RVVFAPPNIGYGRCSGVTHIDPLGTNVMGSAVHSP 454

>VP4B_VACCV (P06440) Major core protein P4b precursor (Virion core protein P4b)|
          Length = 643

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 259 QLIFASPTSGRPSCGGCTYPDTSGTHVTAISILDP 363
           +++FA P  G   C G T+ D  GT+V   ++  P
Sbjct: 420 RVVFAPPNIGYGRCSGVTHIDPLGTNVMGSAVHSP 454

>MMP9_RAT (P50282) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 708

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 24  NSSREYGFAPSQSIYTVH 77
           ++ R+YGF PS+++YT H
Sbjct: 264 DTDRKYGFCPSENLYTEH 281

>PTC1_BRARE (Q98864) Protein patched homolog 1 (Patched 1) (PTC1)|
          Length = 1220

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 260 CNPAGPHLVCVLPPTLSTSYCIPA*FMS 177
           C+ AG H+V +LPPT   S   P+  +S
Sbjct: 648 CDAAGQHIVTILPPTSQISTTPPSMVLS 675

>TOLB_HAEIN (P44677) Protein tolB precursor|
          Length = 427

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 220 GGSTHTRWGPAGLQLIFASPTSGRPSCGGCTYPDTSGTHVTAI 348
           G +T   W P G  ++F S  SG P        D SG   TA+
Sbjct: 290 GNNTEPAWSPDGNSILFTSDRSGSPQ---VYRMDASGGSATAV 329

>SYTL5_MOUSE (Q80T23) Synaptotagmin-like protein 5|
          Length = 753

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 18  TPNSSREYGFAPSQSIYTVHVTYRK--KEQSPGKYRTPCIS-NGEALSSYRNGTEV 176
           T  +SRE+GF  S ++ T+  T  +  K        TP I+ +G +LSS R+ +EV
Sbjct: 272 TSINSREHGFENSMALATIENTCEELTKSHRRNTSGTPSIAVSGTSLSSERSRSEV 327

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 268  ISAATRQVPTWCACFLPPSAPP 203
            +SA+ + VPT  A  LPP+ PP
Sbjct: 1076 VSASVQSVPTQTATLLPPANPP 1097

>DCR1A_HUMAN (Q6PJP8) DNA cross-link repair 1A protein (hSNM1) (hSNM1A)|
          Length = 1040

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 195 TGLIHEPPLCHYDSCLEPPHLRYKVFC----ICLETVPFFYRLHARCIL 61
           + LI + P  H   CL+ P  R +  C    +C  T+PF Y+ +   +L
Sbjct: 130 SSLIGQTPRWHVFECLDSPP-RSETECPDGLLCTSTIPFHYKRYTHFLL 177

>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47|
          Length = 641

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 20/72 (27%), Positives = 24/72 (33%)
 Frame = -1

Query: 345 RRDVCPAGVGVCXXXXXXXXXXXRCEYQLQPGRSPPGVRASSHPQHLLLHTGLIHEPPLC 166
           R D CP G  +             C   L P    P +R      H L+       PPL 
Sbjct: 132 RCDACPEGAALPAALSCLSCLASFCSAHLAPHERSPALRG-----HRLV-------PPLR 179

Query: 165 HYDSCLEPPHLR 130
             +  L P HLR
Sbjct: 180 RLEESLCPRHLR 191

>DNAA_AZOSE (Q5P4P0) Chromosomal replication initiator protein dnaA|
          Length = 481

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 198 AVGGAEGGRKHAHQVGTCRVAADIRI 275
           A+G A GGR H   +  CR  A++R+
Sbjct: 438 AIGEAFGGRDHTTVMHACRTIAELRL 463

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +3

Query: 30  SREYGFAPSQSIYTVHVTYRKKEQSPGKYRTPCISNGEALSSYRNGTEVAHESSRYAVGG 209
           SR +GF          +T+   E +    R     NGE+L   +   + A +S+R + GG
Sbjct: 46  SRGFGF----------ITFTNPEHASDAMRA---MNGESLDGRQIRVDHAGKSARGSRGG 92

Query: 210 AEGGRKHAHQVG 245
           A GGR  ++  G
Sbjct: 93  AFGGRGRSYSRG 104

>PDLI4_MOUSE (P70271) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein)
          Length = 330

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 326 LVSGYVHPPQLGLPDVGDANISCNPAGPHLVCVLPPT 216
           L S Y  PP+L +P  G +N +  PA    + V PPT
Sbjct: 132 LGSPYGQPPRLPVPHNGSSNEATLPAQMSALHVSPPT 168


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,257,202
Number of Sequences: 219361
Number of extensions: 1469318
Number of successful extensions: 3844
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3843
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)