Clone Name | rbastl55g05 |
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Clone Library Name | barley_pub |
>dbj|AK104059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F12, full insert sequence Length = 1492 Score = 155 bits (78), Expect = 1e-34 Identities = 156/182 (85%) Strand = Plus / Minus Query: 185 atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244 ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| | Sbjct: 1197 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 1138 Query: 245 gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304 | |||||||||||||||||||| || || ||||| |||| |||||||| ||||| |||| Sbjct: 1137 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 1078 Query: 305 ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttgatcctt 364 | || || || || ||||||||||| || |||||||| | |||||| |||||||| |||| Sbjct: 1077 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttgaacctt 1018 Query: 365 gt 366 || Sbjct: 1017 gt 1016
>dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049N15, full insert sequence Length = 4187 Score = 155 bits (78), Expect = 1e-34 Identities = 156/182 (85%) Strand = Plus / Minus Query: 185 atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244 ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| | Sbjct: 3926 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 3867 Query: 245 gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304 | |||||||||||||||||||| || || ||||| |||| |||||||| ||||| |||| Sbjct: 3866 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 3807 Query: 305 ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttgatcctt 364 | || || || || ||||||||||| || |||||||| | |||||| |||||||| |||| Sbjct: 3806 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttgaacctt 3747 Query: 365 gt 366 || Sbjct: 3746 gt 3745
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 149 bits (75), Expect = 7e-33 Identities = 150/175 (85%) Strand = Plus / Plus Query: 185 atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244 ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| | Sbjct: 22552918 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 22552977 Query: 245 gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304 | |||||||||||||||||||| || || ||||| |||| |||||||| ||||| |||| Sbjct: 22552978 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 22553037 Query: 305 ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttga 359 | || || || || ||||||||||| || |||||||| | |||||| |||||||| Sbjct: 22553038 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttga 22553092
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 149 bits (75), Expect = 7e-33 Identities = 150/175 (85%) Strand = Plus / Plus Query: 185 atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244 ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| | Sbjct: 22481263 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 22481322 Query: 245 gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304 | |||||||||||||||||||| || || ||||| |||| |||||||| ||||| |||| Sbjct: 22481323 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 22481382 Query: 305 ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttga 359 | || || || || ||||||||||| || |||||||| | |||||| |||||||| Sbjct: 22481383 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttga 22481437
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 149 bits (75), Expect = 7e-33 Identities = 150/175 (85%) Strand = Plus / Plus Query: 185 atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244 ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| | Sbjct: 55497 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 55556 Query: 245 gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304 | |||||||||||||||||||| || || ||||| |||| |||||||| ||||| |||| Sbjct: 55557 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 55616 Query: 305 ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttga 359 | || || || || ||||||||||| || |||||||| | |||||| |||||||| Sbjct: 55617 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttga 55671
>gb|AY108565.1| Zea mays PCO103773 mRNA sequence Length = 749 Score = 89.7 bits (45), Expect = 6e-15 Identities = 141/173 (81%) Strand = Plus / Minus Query: 193 ggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggggacctgcc 252 ||||| |||||||| ||||||| || |||||||| || ||||||||||| || ||||| Sbjct: 544 ggtatacagtaggatgtgctgatggctggaggaaggacacacaccaggtgaggccctgct 485 Query: 253 gggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcgggtgtaca 312 ||||||||||| || || || || || || || |||||| | ||||| || ||||| || Sbjct: 484 gggttgcagctaatgtttgcctcacccacctccggcaggtccagctgcggtgggtggacg 425 Query: 313 taccccgacaccagcgggacacacgtcacggcgatctcgatccttgatccttg 365 ||||| |||||||| || ||||| ||||| | |||||| |||||||| ||||| Sbjct: 424 tacccagacaccagtggcacacatgtcaccgtgatctccatccttgaaccttg 372
>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence Length = 212273 Score = 46.1 bits (23), Expect = 0.079 Identities = 23/23 (100%) Strand = Plus / Plus Query: 89 aaaaaaggaacagtctccaggca 111 ||||||||||||||||||||||| Sbjct: 149290 aaaaaaggaacagtctccaggca 149312
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cacggcgatctcgatccttg 358 |||||||||||||||||||| Sbjct: 1717767 cacggcgatctcgatccttg 1717748
>emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on chromosome X, complete sequence Length = 234055 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 cagaacaccttgtatctcaaatgg 139 ||||||||||||||||||| |||| Sbjct: 139832 cagaacaccttgtatctcagatgg 139855
>gb|AY045526.1| Panthera tigris sumatrae clone 6HDZ859 microsatellite sequence Length = 267 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aaaaaaggaacagtctccag 108 |||||||||||||||||||| Sbjct: 5 aaaaaaggaacagtctccag 24
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 taacctatagaaaaaaggaa 98 |||||||||||||||||||| Sbjct: 1673187 taacctatagaaaaaaggaa 1673168
>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence Length = 256999 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gaagcacgcacaccaggtgg 243 |||||||||||||||||||| Sbjct: 232205 gaagcacgcacaccaggtgg 232186
>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence Length = 159741 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gaagcacgcacaccaggtgg 243 |||||||||||||||||||| Sbjct: 87238 gaagcacgcacaccaggtgg 87257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,723,572 Number of Sequences: 3902068 Number of extensions: 2723572 Number of successful extensions: 45093 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45052 Number of HSP's gapped (non-prelim): 41 length of query: 366 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 344 effective length of database: 17,147,199,772 effective search space: 5898636721568 effective search space used: 5898636721568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)