ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
2dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 149 7e-33
5emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb... 149 7e-33
6gb|AY108565.1| Zea mays PCO103773 mRNA sequence 90 6e-15
7gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, c... 46 0.079
8gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 4.9
9emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on ch... 40 4.9
10gb|AY045526.1| Panthera tigris sumatrae clone 6HDZ859 microsatel... 40 4.9
11dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 4.9
12gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, com... 40 4.9
13gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, co... 40 4.9

>dbj|AK104059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F12, full
            insert sequence
          Length = 1492

 Score =  155 bits (78), Expect = 1e-34
 Identities = 156/182 (85%)
 Strand = Plus / Minus

                                                                        
Query: 185  atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244
            ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 1197 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 1138

                                                                        
Query: 245  gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304
            | |||||||||||||||||||| || || ||||| ||||  |||||||| ||||| ||||
Sbjct: 1137 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 1078

                                                                        
Query: 305  ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttgatcctt 364
            | || || || || ||||||||||| || |||||||| | |||||| |||||||| ||||
Sbjct: 1077 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttgaacctt 1018

              
Query: 365  gt 366
            ||
Sbjct: 1017 gt 1016



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>dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049N15, full
            insert sequence
          Length = 4187

 Score =  155 bits (78), Expect = 1e-34
 Identities = 156/182 (85%)
 Strand = Plus / Minus

                                                                        
Query: 185  atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244
            ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 3926 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 3867

                                                                        
Query: 245  gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304
            | |||||||||||||||||||| || || ||||| ||||  |||||||| ||||| ||||
Sbjct: 3866 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 3807

                                                                        
Query: 305  ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttgatcctt 364
            | || || || || ||||||||||| || |||||||| | |||||| |||||||| ||||
Sbjct: 3806 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttgaacctt 3747

              
Query: 365  gt 366
            ||
Sbjct: 3746 gt 3745



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  149 bits (75), Expect = 7e-33
 Identities = 150/175 (85%)
 Strand = Plus / Plus

                                                                            
Query: 185      atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244
                ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 22552918 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 22552977

                                                                            
Query: 245      gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304
                | |||||||||||||||||||| || || ||||| ||||  |||||||| ||||| ||||
Sbjct: 22552978 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 22553037

                                                                       
Query: 305      ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttga 359
                | || || || || ||||||||||| || |||||||| | |||||| ||||||||
Sbjct: 22553038 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttga 22553092



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  149 bits (75), Expect = 7e-33
 Identities = 150/175 (85%)
 Strand = Plus / Plus

                                                                            
Query: 185      atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244
                ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 22481263 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 22481322

                                                                            
Query: 245      gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304
                | |||||||||||||||||||| || || ||||| ||||  |||||||| ||||| ||||
Sbjct: 22481323 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 22481382

                                                                       
Query: 305      ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttga 359
                | || || || || ||||||||||| || |||||||| | |||||| ||||||||
Sbjct: 22481383 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttga 22481437



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>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131441

 Score =  149 bits (75), Expect = 7e-33
 Identities = 150/175 (85%)
 Strand = Plus / Plus

                                                                         
Query: 185   atcaagccggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggg 244
             ||||||||||||||||||| |||||||| || || |||||||| |||||||||||||| |
Sbjct: 55497 atcaagccggtatgcagtatgaggtgctcagtgtcggaggaaggacgcacaccaggtgag 55556

                                                                         
Query: 245   gacctgccgggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcg 304
             | |||||||||||||||||||| || || ||||| ||||  |||||||| ||||| ||||
Sbjct: 55557 ggcctgccgggttgcagctgatgttggcctcgccgacgtgcggcaggcccagctgcggcg 55616

                                                                    
Query: 305   ggtgtacataccccgacaccagcgggacacacgtcacggcgatctcgatccttga 359
             | || || || || ||||||||||| || |||||||| | |||||| ||||||||
Sbjct: 55617 gatggacgtagccggacaccagcggcacgcacgtcaccgtgatctctatccttga 55671



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>gb|AY108565.1| Zea mays PCO103773 mRNA sequence
          Length = 749

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 141/173 (81%)
 Strand = Plus / Minus

                                                                       
Query: 193 ggtatgcagtaggaggtgctgagggtgggaggaagcacgcacaccaggtggggacctgcc 252
           ||||| |||||||| ||||||| ||  |||||||| || ||||||||||| || ||||| 
Sbjct: 544 ggtatacagtaggatgtgctgatggctggaggaaggacacacaccaggtgaggccctgct 485

                                                                       
Query: 253 gggttgcagctgatattcgcatcgcctacgtcaggcaggcctagctgtggcgggtgtaca 312
           ||||||||||| || || || || || || || |||||| | ||||| || ||||| || 
Sbjct: 484 gggttgcagctaatgtttgcctcacccacctccggcaggtccagctgcggtgggtggacg 425

                                                                
Query: 313 taccccgacaccagcgggacacacgtcacggcgatctcgatccttgatccttg 365
           ||||| |||||||| || ||||| ||||| | |||||| |||||||| |||||
Sbjct: 424 tacccagacaccagtggcacacatgtcaccgtgatctccatccttgaaccttg 372



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>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence
          Length = 212273

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 89     aaaaaaggaacagtctccaggca 111
              |||||||||||||||||||||||
Sbjct: 149290 aaaaaaggaacagtctccaggca 149312



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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 339     cacggcgatctcgatccttg 358
               ||||||||||||||||||||
Sbjct: 1717767 cacggcgatctcgatccttg 1717748



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>emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on chromosome X, complete
              sequence
          Length = 234055

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 116    cagaacaccttgtatctcaaatgg 139
              ||||||||||||||||||| ||||
Sbjct: 139832 cagaacaccttgtatctcagatgg 139855



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>gb|AY045526.1| Panthera tigris sumatrae clone 6HDZ859 microsatellite sequence
          Length = 267

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  aaaaaaggaacagtctccag 108
           ||||||||||||||||||||
Sbjct: 5   aaaaaaggaacagtctccag 24



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      taacctatagaaaaaaggaa 98
               ||||||||||||||||||||
Sbjct: 1673187 taacctatagaaaaaaggaa 1673168



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>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence
          Length = 256999

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    gaagcacgcacaccaggtgg 243
              ||||||||||||||||||||
Sbjct: 232205 gaagcacgcacaccaggtgg 232186



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>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence
          Length = 159741

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gaagcacgcacaccaggtgg 243
             ||||||||||||||||||||
Sbjct: 87238 gaagcacgcacaccaggtgg 87257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,723,572
Number of Sequences: 3902068
Number of extensions: 2723572
Number of successful extensions: 45093
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45052
Number of HSP's gapped (non-prelim): 41
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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