Clone Name | rbastl55g04 |
---|---|
Clone Library Name | barley_pub |
>CH60_PORPU (P51349) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 528 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = -3 Query: 176 TQDAG*DVCTVCVDFNWAGSHVPVTRPRMIWINDGEQGTLAGRCDQI 36 T+DAG + TV +D V VT+ I DG + T+ RC+QI Sbjct: 302 TEDAGFSLDTVQLDMLGKARRVVVTKDSTTIIADGHEATVKSRCEQI 348
>LPQH_MYCAV (P46733) Lipoprotein lpqH precursor (19 kDa lipoprotein antigen)| Length = 161 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 134 NRHIRYIHPNPRLVSCLVTGLQ--DKNYPSLVTDARHQRSSPSSSFTGPPASSG 289 NR +R+ P +++ +V+G +K+ PS SS SSS T P ASSG Sbjct: 2 NRQLRFAVAGPEILAAVVSGCSSGNKSAPS---------SSASSSSTSPSASSG 46
>NFYA3_ARATH (Q93ZH2) Nuclear transcription factor Y subunit A-3 (AtNF-YA-3)| (Transcriptional activator HAP2C) Length = 340 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +1 Query: 52 PASVPCSPSLIQIIRGRVTGTWLPAQLKSTHTVHTS*PASCVVSRYRFTRQKL 210 P + C+P ++ +I GRV LPA+L T V + + R R R KL Sbjct: 152 PQAPTCNPQMVSMIPGRVP---LPAELTETDPVFVNAKQYHAIMRRRQQRAKL 201
>FOLD_STRTR (P96050) FolD bifunctional protein [Includes:| Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Length = 284 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = +1 Query: 1 DNTRPINPDTHHIWSQRPASVPCSPS-LIQIIR 96 D P+N T ++W+ RP VPC+P+ +++I+R Sbjct: 120 DGFHPMN--TGNLWNGRPQMVPCTPAGIMEILR 150
>OTC_RHOPA (Q6N0J0) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 310 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -2 Query: 351 AHRSPELDSQ--PGPDRSIFDQAPEEAGGPVKDDEGLLRWCLASV 223 AHR E+ + GP +FD+A + +G+L WCL +V Sbjct: 269 AHRGEEVTDEVIDGPQSVVFDEAENR----LHAQKGILAWCLGAV 309
>CORO7_HUMAN (P57737) Coronin-7 (70 kDa WD repeat tumor rejection antigen| homolog) Length = 925 Score = 28.5 bits (62), Expect = 4.1 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = +2 Query: 158 PNPRLVSCLVTG---LQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 328 P+P SCLV L D P+ V + + S F+ PP+S + S GP Sbjct: 391 PHPSFTSCLVPPAEPLPDTAQPA-VMETPVGDADASEGFSSPPSSLTSPSTPSSLGPSLS 449 Query: 329 SSSGDLWASSLEQVPSV 379 S+SG + SL + S+ Sbjct: 450 STSGIGTSPSLRSLQSL 466
>DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 627 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +2 Query: 248 SPSSSFTGPPASSGA*SKMLRSGPGWLSSSGDLWASSLEQVPSVSAW 388 +PS F+ SSG S GW +SSG+ W +S S S W Sbjct: 581 APSGGFSSGGGSSGGWGNGGGSSGGWGNSSGN-WGNSSNSSNSNSGW 626
>MYPT1_MOUSE (Q9DBR7) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) Length = 1004 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = +2 Query: 170 LVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTG---PPASSGA*SKMLRSGPGWLSSS 337 L+SC V P++ + A QRS PSS+ T PP SS A ++ S W S Sbjct: 562 LISCSVPSTTST--PTVTSAAGLQRSLPSSTSTAAKTPPGSSSAGTQSSTSNRLWAEDS 618
>SUFI_ECOLI (P26648) Protein sufI precursor| Length = 470 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/67 (34%), Positives = 29/67 (43%) Frame = +2 Query: 149 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 328 + P+ LVS LV L+ LVTD+ R P+ G P S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDIS--LGDDPG-- 363 Query: 329 SSSGDLW 349 +G LW Sbjct: 364 -INGQLW 369
>SWS_DROME (Q9U969) Protein Swiss cheese| Length = 1425 Score = 28.1 bits (61), Expect = 5.3 Identities = 25/99 (25%), Positives = 37/99 (37%) Frame = +1 Query: 13 PINPDTHHIWSQRPASVPCSPSLIQIIRGRVTGTWLPAQLKSTHTVHTS*PASCVVSRYR 192 PIN T Q P P S + +++ V+GT S S V+R Sbjct: 336 PINSQTSQSSRQAPNGPPMVISQMNLMQSAVSGTG-------------SSGVSVTVTRPP 382 Query: 193 FTRQKLSKPRYRCKTPTQQPLVVLYGTTRFFGGLIEDAP 309 + + S+ + P P +GTT F + DAP Sbjct: 383 SSPSRHSREEHTLSDPNPNPDGSFHGTTNLFTEVHGDAP 421
>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 870 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +2 Query: 245 SSPSSSFTGPPASSGA*SKMLRSGPGWLSSSGDLWASSLEQVPSV 379 S P+ G P +SG + + S LSSSG+L S EQ+P V Sbjct: 548 SDPAVHVPGTPGTSG--NSVTPSANSSLSSSGELGQPSGEQMPQV 590
>GP49A_MOUSE (Q61450) Mast cell surface glycoprotein Gp49A precursor| Length = 303 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +3 Query: 3 QHKANKPRHSSYLVTAASKRTLLTIIDPNHPGS--CYRY 113 QH+AN+P H+++++ A + PNH G+ CY + Sbjct: 170 QHQANQPTHATFVLDA---------VAPNHNGTFRCYGF 199
>SUFI_SALTY (P0A1C5) Protein sufI precursor| Length = 470 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/67 (34%), Positives = 29/67 (43%) Frame = +2 Query: 149 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 328 + P+ LVS LV L+ LVTD R P+ +G P S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPTEIMSGAPVRSRDIS--LGDDPG-- 363 Query: 329 SSSGDLW 349 +G LW Sbjct: 364 -INGQLW 369
>SUFI_SALTI (P0A1C6) Protein sufI precursor| Length = 470 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/67 (34%), Positives = 29/67 (43%) Frame = +2 Query: 149 YIHPNPRLVSCLVTGLQDKNYPSLVTDARHQRSSPSSSFTGPPASSGA*SKMLRSGPGWL 328 + P+ LVS LV L+ LVTD R P+ +G P S S L PG Sbjct: 308 FFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPTEIMSGAPVRSRDIS--LGDDPG-- 363 Query: 329 SSSGDLW 349 +G LW Sbjct: 364 -INGQLW 369
>EPHB4_MOUSE (P54761) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor MDK-2) (Developmental kinase 2) (Tyrosine kinase MYK-1) Length = 987 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = +2 Query: 200 DKNYPSLVTDARHQRSSPSS---SFTGPPASSGA 292 D+ P V+D R RSSPSS S+ P A SGA Sbjct: 430 DREVPPAVSDIRVTRSSPSSLILSWAIPRAPSGA 463
>VD4L_CWPXG (O73579) Ankyrin repeat protein D4L/I2R| Length = 672 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 134 NRHIRYIHPNPRLVSCLVTGLQDKNYPSLV 223 NR IRY++P P L + D ++PS V Sbjct: 532 NRDIRYLYPEPLLACIRYALILDDDFPSKV 561
>CH60_GRATL (Q6B911) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 528 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -3 Query: 176 TQDAG*DVCTVCVDFNWAGSHVPVTRPRMIWINDGEQGTLAGRCDQI 36 TQD G + ++ +D + V +T+ + D ++ + RCDQI Sbjct: 302 TQDMGLSLDSMSLDQLGSARRVQITKDSTTIVADAQKDLIQARCDQI 348
>NCK2_HUMAN (O43639) Cytoplasmic protein NCK2 (NCK adaptor protein 2) (SH2/SH3| adaptor protein NCK-beta) (Nck-2) Length = 380 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +2 Query: 191 GLQDKNYPSLVTD--ARHQRSSPSSSFTGPPAS 283 GL KNY +++D A H +P S+TGP +S Sbjct: 245 GLVPKNYVVVLSDGPALHPAHAPQISYTGPSSS 277
>CD97_BOVIN (Q8SQA4) CD97 antigen precursor| Length = 734 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +2 Query: 242 RSSPSSSFTGPPASSGA*SKMLRSGPGWLSSSGDLWASSLEQVPSVS 382 ++S + + PP SS R PG++S SG+++ LE ++ Sbjct: 27 QNSKACALPCPPNSSCVNGTACRCAPGFISFSGEIFTDPLESCDDIN 73
>UBP28_HUMAN (Q96RU2) Ubiquitin carboxyl-terminal hydrolase 28 (EC 3.1.2.15)| (Ubiquitin thioesterase 28) (Ubiquitin-specific-processing protease 28) (Deubiquitinating enzyme 28) Length = 1077 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +3 Query: 120 ACPVEIDTYGTYILTRVLCRVSLQVYK--TKTIQASLQMQDT 239 +CP E DT+ T L+ V C VS Q K T T +S ++ T Sbjct: 460 SCPPESDTHMTLPLSSVHCSVSDQTSKESTSTESSSQDVEST 501
>GCY33_CAEEL (P90895) Soluble guanylate cyclase gcy-33 (EC 4.6.1.2)| Length = 945 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +1 Query: 187 YRFTRQKLSKPRYRCKTPTQQPLVVLYGTTR------FFGGLIEDAPVGARLAIELR 339 +RF+ KL P + CK+ ++ L++ Y + R G L+E A V +L I ++ Sbjct: 107 FRFSYPKLRAPSFYCKSESEDGLILHYRSRRTGYLSYVIGQLVELARVFYQLDIGIQ 163
>LIRB4_MOUSE (Q64281) Leukocyte immunoglobulin-like receptor subfamily B member| 4 precursor (Mast cell surface glycoprotein Gp49B) Length = 335 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +3 Query: 3 QHKANKPRHSSYLVTAASKRTLLTIIDPNHPGS--CYRY 113 QH+AN+P ++++++ A + PNH G+ CY Y Sbjct: 170 QHQANQPSYATFVLDA---------VTPNHNGTFRCYGY 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,395,335 Number of Sequences: 219361 Number of extensions: 1251752 Number of successful extensions: 3294 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3290 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)