ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55g03 |
|---|---|
| Clone Library Name | barley_pub |
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 77.0 bits (188), Expect = 2e-14 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Frame = -1 Query: 426 DLESIVEFNNREVIVYKDDNEKPPVGEGLNKAAVVTLLNIKCVNRKTSEPYTEGP---RV 256 +L+ IV +EVIVY DDN+KPPVGEGLN+ A VTL + + KTS + P Sbjct: 786 NLDDIVHIRRKEVIVYVDDNQKPPVGEGLNRKAEVTLDGVWPTD-KTSRCLIKSPDRLAD 844 Query: 255 DKYKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 124 Y+ L + +QG +F + G W FKV HFS YG +++ Sbjct: 845 INYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 888
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 76.6 bits (187), Expect = 2e-14 Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Frame = -1 Query: 426 DLESIVEFNNREVIVYKDDNEKPPVGEGLNKAAVVTLLNIKCVNRKTSEPYTEGP---RV 256 +L+ IV +EV+VY DDN+KPPVGEGLN+ A VTL + + KTS + P Sbjct: 787 NLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTD-KTSRCLIKSPDRLAD 845 Query: 255 DKYKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 124 Y+ L + +QG +F + G W FKV HFS YG +++ Sbjct: 846 INYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 889
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 66.2 bits (160), Expect = 3e-11 Identities = 33/98 (33%), Positives = 55/98 (56%) Frame = -1 Query: 402 NNREVIVYKDDNEKPPVGEGLNKAAVVTLLNIKCVNRKTSEPYTEGPRVDKYKEMLVKKA 223 +++ V VY D+ KP +G GLN A++TL N+ V++KT +P + + +++ K Sbjct: 522 SSKTVEVYPDEATKPMIGHGLNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLR 581 Query: 222 EEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAEVGLID 109 + + +IS++ G W FKV HFS +G E ID Sbjct: 582 SMREMNYISYNPFGGTWTFKVNHFSIWGLVNEEDAEID 619
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 63.9 bits (154), Expect = 1e-10 Identities = 35/97 (36%), Positives = 55/97 (56%) Frame = -1 Query: 414 IVEFNNREVIVYKDDNEKPPVGEGLNKAAVVTLLNIKCVNRKTSEPYTEGPRVDKYKEML 235 +V F + VY + PP+GEGLN A++TL ++R+T EP + P+ +Y + + Sbjct: 850 VVVFERKICAVYPVEGSSPPLGEGLNVPAIITLEKTWPLSRETREPIKD-PQNPRYIQHV 908 Query: 234 VKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 124 + + EFI F+ G+W FKV+HFS YG + E Sbjct: 909 KRLHRIKDTEFIDFN--DGKWIFKVQHFSRYGLLDDE 943
>NU116_YEAST (Q02630) Nucleoporin NUP116/NSP116 (Nuclear pore protein| NUP116/NSP116) Length = 1113 Score = 43.1 bits (100), Expect = 3e-04 Identities = 25/87 (28%), Positives = 42/87 (48%) Frame = -1 Query: 414 IVEFNNREVIVYKDDNEKPPVGEGLNKAAVVTLLNIKCVNRKTSEPYTEGPRVDKYKEML 235 I+ F + I+Y + +P GEG+N A +T N V++ T +P + P K + Sbjct: 1023 IITFEPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKD-PNHQLVKRHI 1081 Query: 234 VKKAEEQGVEFISFDAAKGEWKFKVKH 154 + + +F S+DA G + F V H Sbjct: 1082 ERLKKNPNSKFESYDADSGTYVFIVNH 1108
>NU100_YEAST (Q02629) Nucleoporin NUP100/NSP100 (Nuclear pore protein| NUP100/NSP100) Length = 959 Score = 38.1 bits (87), Expect = 0.009 Identities = 22/87 (25%), Positives = 42/87 (48%) Frame = -1 Query: 414 IVEFNNREVIVYKDDNEKPPVGEGLNKAAVVTLLNIKCVNRKTSEPYTEGPRVDKYKEML 235 +V F + +Y++ + KP GEG+N VTL + ++++T +P + K + Sbjct: 870 LVTFGPKSCSIYENCSIKPEKGEGINVRCRVTLYSCFPIDKETRKP-IKNITHPLLKRSI 928 Query: 234 VKKAEEQGVEFISFDAAKGEWKFKVKH 154 K E +F S+D G + + + H Sbjct: 929 AKLKENPVYKFESYDPVTGTYSYTIDH 955
>KNL2_BOMOR (P83059) Kininogen-2 precursor (BOK-2) [Contains: [Thr6]bradykinin]| Length = 161 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +3 Query: 342 GPRQPGASRYHPCTQSLHGY*IPRSIPD 425 GP P +R +P LHG+ IPR++P+ Sbjct: 39 GPHIPRNNRDYPIRTHLHGHHIPRNVPE 66
>CDC25_YEAST (P04821) Cell division control protein 25| Length = 1589 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +2 Query: 176 SPLAASNEMNSTPCSSAFFTSISLYLSTLGPSVYGSLVFLLTHLMFRRVT 325 SP+ S+ + SSAFF L L + P Y + + +L H ++ R+T Sbjct: 1276 SPIHMSSSSLPSSASSAFFRLKKLKLLDIDPYTYATQLTVLEHDLYLRIT 1325
>LGT2_STRCO (Q9FBW3) Prolipoprotein diacylglyceryl transferase 2 (EC 2.4.99.-)| Length = 317 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 259 PWTLRVWLACLPVNTLDVQKSHHSSFVQALANRGLLVIIL 378 PW L + A P TLD+ H + ++L N G+ +IL Sbjct: 158 PWGLEIDRAHRPAGTLDIATYHPTFLYESLWNIGVAALIL 197
>DLG2_RAT (Q63622) Discs large homolog 2 (Postynaptic density protein PSD-93)| (Channel-associated protein of synapse-110) (Chapsyn-110) Length = 852 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 268 LRVWLACLPVNTLDVQKSHHSSFVQALANRGLLVIILVHNHFTVIE 405 LRV L VN +DV + HS V+AL G +V + V ++E Sbjct: 144 LRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRRPILE 189
>DLG2_MOUSE (Q91XM9) Discs large homolog 2 (Postsynaptic density protein| PSD-93) (Channel-associated protein of synapse-110) (Chapsyn-110) Length = 852 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 268 LRVWLACLPVNTLDVQKSHHSSFVQALANRGLLVIILVHNHFTVIE 405 LRV L VN +DV + HS V+AL G +V + V ++E Sbjct: 144 LRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRRPILE 189
>DLG2_HUMAN (Q15700) Discs large homolog 2 (Postsynaptic density protein| PSD-93) (Channel-associated protein of synapse-110) (Chapsyn-110) Length = 870 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 268 LRVWLACLPVNTLDVQKSHHSSFVQALANRGLLVIILVHNHFTVIE 405 LRV L VN +DV + HS V+AL G +V + V ++E Sbjct: 144 LRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRRPILE 189
>CDC53_YEAST (Q12018) Cell division control protein 53 (Cullin-A) (E3 ubiquitin| ligase complex SCF subunit CDC53) Length = 815 Score = 28.9 bits (63), Expect = 5.3 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 17/90 (18%) Frame = -1 Query: 426 DLESIVEFNNREVIVYKDDNEKPPVGEGLNKAAV-----------VTLLNIKCVNRKTS- 283 + I++ + + +Y DD+ K P+ LNK + V LL+ + + + TS Sbjct: 255 EAHEIIKREEKAMTIYWDDHTKKPLSMALNKVLITDHIEKLENEFVVLLDARDIEKITSL 314 Query: 282 -----EPYTEGPRVDKYKEMLVKKAEEQGV 208 +T PR+ E VKK E + Sbjct: 315 YALIRRDFTLIPRMASVFENYVKKTGENEI 344
>RRMJ_BARHE (Q6G4Z3) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 247 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%) Frame = -1 Query: 336 KAAVVTLLNIKCVNRKTSEPYTEGPRVDKYKEMLVKKAEE---------QGVEFISFDAA 184 KA +T + + + R ++PY +VD Y+ K E +G + I AA Sbjct: 27 KAGTITASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINQRYKFLKKGQKIIDLGAA 86 Query: 183 KGEW 172 G W Sbjct: 87 PGGW 90
>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)| [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan receptor for endocytosis)] (Fragment) Length = 1431 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 15 KISHIALFRKQKRHNESPPKSVTTSMDGATWNRSGL 122 +IS R Q+RH +SPP + + +++ W + L Sbjct: 1376 RISQTLCMRPQRRHPQSPPVTPSQTLENRIWRTATL 1411
>DPO3A_THEMA (Q9ZHG4) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 842 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = -1 Query: 327 VVTLLNIKCVNRKTSEPYTEGPRVDKYKEMLVKKAEEQGVEFIS 196 V +LN + + + + + P+ + E+L+KKAE G E+IS Sbjct: 138 VADILNAEAYDLRVNHRFPTPPK--NWNELLIKKAEPLGEEYIS 179
>RDRP_FHV (Q66929) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 998 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/72 (27%), Positives = 27/72 (37%) Frame = +2 Query: 188 ASNEMNSTPCSSAFFTSISLYLSTLGPSVYGSLVFLLTHLMFRRVTTAALFRPSPTGGFS 367 A + N TP AF + + P V LL H+ R F P GF Sbjct: 143 AQDFRNDTPADDAFIVGVDVDYYVTEPDV------LLEHM---RPVVLHTFNPKKVSGFD 193 Query: 368 LSSLYTITSRLL 403 S +TI + L+ Sbjct: 194 ADSPFTIKNNLV 205
>RDRP_BBV (Q96631) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 998 Score = 28.1 bits (61), Expect = 9.0 Identities = 20/72 (27%), Positives = 27/72 (37%) Frame = +2 Query: 188 ASNEMNSTPCSSAFFTSISLYLSTLGPSVYGSLVFLLTHLMFRRVTTAALFRPSPTGGFS 367 A + N TP AF + + P V LL H+ R F P GF Sbjct: 143 AQDFRNDTPADDAFIVGVDVDYYVTEPDV------LLEHM---RPVVLHTFNPKKVSGFD 193 Query: 368 LSSLYTITSRLL 403 S +TI + L+ Sbjct: 194 ADSPFTIKNNLV 205
>GRIK1_HUMAN (P39086) Glutamate receptor, ionotropic kainate 1 precursor| (Glutamate receptor 5) (GluR-5) (GluR5) (Excitatory amino acid receptor 3) (EAA3) Length = 918 Score = 28.1 bits (61), Expect = 9.0 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Frame = +1 Query: 91 WTGLHGIDQAYFSFSKTIGAEVLHLELPLALSSVKRDEXXXXXXXXXXXXXXXXXXPWT- 267 W GL G + +F+KT G L + L + S+K + W Sbjct: 369 WDGLTG----HITFNKTNG---LRKDFDLDIISLKEEGTEKAAGEVSKHLYKV----WKK 417 Query: 268 LRVWLACLPVNTLDVQKSHHSSFVQALANRGLLVIILVHNHFTVIEFHDR 417 + +W + +N D K S+ +LANR L+V ++ + + D+ Sbjct: 418 IGIWNSNSGLNMTDSNKDKSSNITDSLANRTLIVTTILEEPYVMYRKSDK 467 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,021,674 Number of Sequences: 219361 Number of extensions: 919949 Number of successful extensions: 2949 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2887 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2942 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
