Clone Name | rbastl55g03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 281 bits (142), Expect = 9e-73 Identities = 262/302 (86%) Strand = Plus / Minus Query: 125 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 184 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 3343077 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3343018 Query: 185 gcagcgtcaaacgagatgaactccacaccctgctcctcagccttcttcaccagcatctcc 244 ||||| || || ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct: 3343017 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 3342958 Query: 245 ttgtacttgtccacccttggaccctccgtgtatggctcgcttgtcttcctgttaacacac 304 ||||||||| ||||||| |||||||| ||||| |||| | |||||| |||| | ||| Sbjct: 3342957 ttgtacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcac 3342898 Query: 305 ttgatgttcagaagagtcaccacagcagctttgttcaggccctcgccaaccgggggcttc 364 ||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 3342897 ttgatattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 3342838 Query: 365 tcgttatcatccttgtacacaatcacttcacggttattgaattccacgatcgattccaga 424 | | |||| ||||||||||| |||||||||||||||||||||||||| || || |||||| Sbjct: 3342837 ttgctatcgtccttgtacacgatcacttcacggttattgaattccacaatggactccaga 3342778 Query: 425 tc 426 || Sbjct: 3342777 tc 3342776 Score = 260 bits (131), Expect = 3e-66 Identities = 260/303 (85%) Strand = Plus / Minus Query: 124 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 183 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 3351813 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351754 Query: 184 agcagcgtcaaacgagatgaactccacaccctgctcctcagccttcttcaccagcatctc 243 | || || || ||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 3351753 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 3351694 Query: 244 cttgtacttgtccacccttggaccctccgtgtatggctcgcttgtcttcctgttaacaca 303 |||||||||||||||||| |||||||| ||||| | || | |||||| |||| | || Sbjct: 3351693 cttgtacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgca 3351634 Query: 304 cttgatgttcagaagagtcaccacagcagctttgttcaggccctcgccaaccgggggctt 363 |||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct: 3351633 cttgatattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggctt 3351574 Query: 364 ctcgttatcatccttgtacacaatcacttcacggttattgaattccacgatcgattccag 423 || | |||| ||||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct: 3351573 cttgctatcgtccttgtacacgatcacttcacggttattgaattccacaatggactccag 3351514 Query: 424 atc 426 ||| Sbjct: 3351513 atc 3351511 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aacttccatggacggggcta 102 |||||||||||||||||||| Sbjct: 18082524 aacttccatggacggggcta 18082505
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 281 bits (142), Expect = 9e-73 Identities = 262/302 (86%) Strand = Plus / Minus Query: 125 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 184 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 3343022 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 3342963 Query: 185 gcagcgtcaaacgagatgaactccacaccctgctcctcagccttcttcaccagcatctcc 244 ||||| || || ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct: 3342962 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 3342903 Query: 245 ttgtacttgtccacccttggaccctccgtgtatggctcgcttgtcttcctgttaacacac 304 ||||||||| ||||||| |||||||| ||||| |||| | |||||| |||| | ||| Sbjct: 3342902 ttgtacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcac 3342843 Query: 305 ttgatgttcagaagagtcaccacagcagctttgttcaggccctcgccaaccgggggcttc 364 ||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 3342842 ttgatattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 3342783 Query: 365 tcgttatcatccttgtacacaatcacttcacggttattgaattccacgatcgattccaga 424 | | |||| ||||||||||| |||||||||||||||||||||||||| || || |||||| Sbjct: 3342782 ttgctatcgtccttgtacacgatcacttcacggttattgaattccacaatggactccaga 3342723 Query: 425 tc 426 || Sbjct: 3342722 tc 3342721 Score = 260 bits (131), Expect = 3e-66 Identities = 260/303 (85%) Strand = Plus / Minus Query: 124 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 183 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 3351758 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 3351699 Query: 184 agcagcgtcaaacgagatgaactccacaccctgctcctcagccttcttcaccagcatctc 243 | || || || ||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 3351698 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 3351639 Query: 244 cttgtacttgtccacccttggaccctccgtgtatggctcgcttgtcttcctgttaacaca 303 |||||||||||||||||| |||||||| ||||| | || | |||||| |||| | || Sbjct: 3351638 cttgtacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgca 3351579 Query: 304 cttgatgttcagaagagtcaccacagcagctttgttcaggccctcgccaaccgggggctt 363 |||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct: 3351578 cttgatattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggctt 3351519 Query: 364 ctcgttatcatccttgtacacaatcacttcacggttattgaattccacgatcgattccag 423 || | |||| ||||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct: 3351518 cttgctatcgtccttgtacacgatcacttcacggttattgaattccacaatggactccag 3351459 Query: 424 atc 426 ||| Sbjct: 3351458 atc 3351456 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aacttccatggacggggcta 102 |||||||||||||||||||| Sbjct: 18008845 aacttccatggacggggcta 18008826
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 281 bits (142), Expect = 9e-73 Identities = 262/302 (86%) Strand = Plus / Minus Query: 125 tcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctta 184 ||||||||| |||| |||||||||||||| ||||| ||| |||| |||||||||||||| Sbjct: 22130 tcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttg 22071 Query: 185 gcagcgtcaaacgagatgaactccacaccctgctcctcagccttcttcaccagcatctcc 244 ||||| || || ||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct: 22070 gcagcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctcc 22011 Query: 245 ttgtacttgtccacccttggaccctccgtgtatggctcgcttgtcttcctgttaacacac 304 ||||||||| ||||||| |||||||| ||||| |||| | |||||| |||| | ||| Sbjct: 22010 ttgtacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcac 21951 Query: 305 ttgatgttcagaagagtcaccacagcagctttgttcaggccctcgccaaccgggggcttc 364 ||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 21950 ttgatattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 21891 Query: 365 tcgttatcatccttgtacacaatcacttcacggttattgaattccacgatcgattccaga 424 | | |||| ||||||||||| |||||||||||||||||||||||||| || || |||||| Sbjct: 21890 ttgctatcgtccttgtacacgatcacttcacggttattgaattccacaatggactccaga 21831 Query: 425 tc 426 || Sbjct: 21830 tc 21829 Score = 260 bits (131), Expect = 3e-66 Identities = 260/303 (85%) Strand = Plus / Minus Query: 124 ttcagcttcagcaaaaccataggagctgaagtgcttcaccttgaacttccactcgccctt 183 |||||||||| |||| |||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct: 30866 ttcagcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccatt 30807 Query: 184 agcagcgtcaaacgagatgaactccacaccctgctcctcagccttcttcaccagcatctc 243 | || || || ||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 30806 gacggcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctc 30747 Query: 244 cttgtacttgtccacccttggaccctccgtgtatggctcgcttgtcttcctgttaacaca 303 |||||||||||||||||| |||||||| ||||| | || | |||||| |||| | || Sbjct: 30746 cttgtacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgca 30687 Query: 304 cttgatgttcagaagagtcaccacagcagctttgttcaggccctcgccaaccgggggctt 363 |||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct: 30686 cttgatattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggctt 30627 Query: 364 ctcgttatcatccttgtacacaatcacttcacggttattgaattccacgatcgattccag 423 || | |||| ||||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct: 30626 cttgctatcgtccttgtacacgatcacttcacggttattgaattccacaatggactccag 30567 Query: 424 atc 426 ||| Sbjct: 30566 atc 30564
>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence Length = 1871 Score = 149 bits (75), Expect = 9e-33 Identities = 203/245 (82%), Gaps = 3/245 (1%) Strand = Plus / Minus Query: 143 taggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgagatg 202 |||| |||||||||||||||| ||||||||||||| ||||| ||||||| || || | Sbjct: 1565 taggcgctgaagtgcttcaccctgaacttccactctcccttgacagcgtcgaaggacaca 1506 Query: 203 aactccacaccctgctcctcagccttcttcaccagcatctccttgtacttgtccaccctt 262 ||||| | ||||||||||| ||||||||||||||||||||| ||||| | ||||| ||| Sbjct: 1505 aactctgcgccctgctcctccgccttcttcaccagcatctccctgtacctctccactctt 1446 Query: 263 ggaccctccgtgtatggctcgcttgtcttcctgttaacacacttgatgttcagaagagtc 322 | || || | | ||||| | |||||| |||| || |||||||||||||| |||||| Sbjct: 1445 g---ccccctggcacggctccccggtcttcttgtttacgcacttgatgttcagtagagtc 1389 Query: 323 accacagcagctttgttcaggccctcgccaaccgggggcttctcgttatcatccttgtac 382 ||| | ||||| |||||||| |||||||| || |||||||||| | |||| ||||||||| Sbjct: 1388 acctctgcagccttgttcagcccctcgcccacagggggcttcttgctatcgtccttgtac 1329 Query: 383 acaat 387 ||||| Sbjct: 1328 acaat 1324
>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence Length = 1900 Score = 141 bits (71), Expect = 2e-30 Identities = 233/287 (81%) Strand = Plus / Minus Query: 140 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaacgag 199 ||||||| |||||| ||||||||| ||||||||||||| ||||| ||||| ||||| || Sbjct: 1733 ccataggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggac 1674 Query: 200 atgaactccacaccctgctcctcagccttcttcaccagcatctccttgtacttgtccacc 259 | |||||| | ||||||||||| |||||||||| |||||||||| ||||| | |||||| Sbjct: 1673 acaaactccgcgccctgctcctccgccttcttcatcagcatctccctgtacctctccacc 1614 Query: 260 cttggaccctccgtgtatggctcgcttgtcttcctgttaacacacttgatgttcagaaga 319 |||| ||||| ||| ||| | |||||| | || || |||||||||||||| ||| Sbjct: 1613 cttgtcccctcacagtactcctccccagtcttcttatttacgcacttgatgttcagtaga 1554 Query: 320 gtcaccacagcagctttgttcaggccctcgccaaccgggggcttctcgttatcatccttg 379 |||||| | ||||| |||||||| ||||| || || |||||||||| | || |||||| Sbjct: 1553 gtcacctccgcagccttgttcagcccctcacccacagggggcttcttcctgtcgtccttg 1494 Query: 380 tacacaatcacttcacggttattgaattccacgatcgattccagatc 426 || |||| ||| || ||||| || || ||||| || ||||||||||| Sbjct: 1493 taaacaaccacctcccggttgttaaactccactattgattccagatc 1447
>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence Length = 625 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 140 ccataggagctgaagtgcttcaccttgaacttccactcgcccttagcagcgtcaaa 195 ||||||| |||||||||||||||| ||||||||||||| ||||| ||||| ||||| Sbjct: 181 ccataggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 302 cacttgatgttcagaagagtcaccacagcagctttgttcaggccctc 348 |||||||||||||| ||||||||| | ||||| |||||||| ||||| Sbjct: 343 cacttgatgttcagtagagtcacctccgcagccttgttcagcccctc 389
>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds Length = 732 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 135 caaaaccataggagctgaagtgcttcaccttgaacttccactc 177 ||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 430 caaaatcatagcagctgaagtgcttcaccctgaacttccactc 388
>ref|XM_518147.1| PREDICTED: Pan troglodytes LOC462325 (LOC462325), mRNA Length = 17490 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Minus Query: 205 ctccacaccctgctcctcagcct 227 ||||||||||||||||||||||| Sbjct: 3636 ctccacaccctgctcctcagcct 3614
>gb|AC110034.8| Mus musculus chromosome 3, clone RP23-237L12, complete sequence Length = 188908 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Minus Query: 213 cctgctcctcagccttcttcacc 235 ||||||||||||||||||||||| Sbjct: 134879 cctgctcctcagccttcttcacc 134857
>gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, complete sequence Length = 168716 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 213 cctgctcctcagccttcttcacc 235 ||||||||||||||||||||||| Sbjct: 168214 cctgctcctcagccttcttcacc 168236
>gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, complete sequence Length = 146635 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Minus Query: 369 tatcatccttgtacacaatcacttcacggttatt 402 |||||||| ||||||| || |||||||||||||| Sbjct: 66442 tatcatccatgtacacgataacttcacggttatt 66409
>gb|AC161470.3| Gallus gallus BAC clone CH261-85J8 from chromosome ul, complete sequence Length = 213142 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 ccacaccctgctcctcagcct 227 ||||||||||||||||||||| Sbjct: 104745 ccacaccctgctcctcagcct 104725
>ref|XM_585718.2| PREDICTED: Bos taurus similar to tumor protein p53 inducible protein 3, transcript variant 1 (LOC508875), mRNA Length = 1957 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 cttcaccagcatctccttgtactt 252 |||||||||||||| ||||||||| Sbjct: 1226 cttcaccagcatctgcttgtactt 1203
>gb|AC147329.2| Pan troglodytes BAC clone RP43-21F14 from 7, complete sequence Length = 189770 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cttcagcaaaaccataggag 148 |||||||||||||||||||| Sbjct: 109436 cttcagcaaaaccataggag 109455
>gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, complete sequence Length = 176187 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cttcagcaaaaccataggag 148 |||||||||||||||||||| Sbjct: 5023 cttcagcaaaaccataggag 5004
>gb|AY494082.1| Homo sapiens cell division cycle 25B (CDC25B) gene, complete cds Length = 13771 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gagatgaactccacaccctgctcc 220 |||||||||||||||| ||||||| Sbjct: 8403 gagatgaactccacactctgctcc 8380
>gb|AC079589.6| Homo sapiens BAC clone RP11-589K23 from 7, complete sequence Length = 19706 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cttcagcaaaaccataggag 148 |||||||||||||||||||| Sbjct: 1363 cttcagcaaaaccataggag 1344
>emb|AL109804.41|HS1009E24 Human DNA sequence from clone RP5-1009E24 on chromosome 20 Contains the 5' end of the ADAM33 gene for a disintegrin and metalloproteinase domain 33 protein, the SN gene encoding sialoadhesin, the C20orf60 gene, the C20orf27 gene, the C20orf28 gene, the CENPB gene for centromere protein B, the CDC25B gene for cell division cycle protein 25B, the C20orf29 gene, the 5' end of the gene for a novel protein (KIAA1271) and nine CpG islands, complete sequence Length = 185820 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gagatgaactccacaccctgctcc 220 |||||||||||||||| ||||||| Sbjct: 127277 gagatgaactccacactctgctcc 127254
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 aggccctcgccaaccggggg 360 |||||||||||||||||||| Sbjct: 2395864 aggccctcgccaaccggggg 2395883
>gb|AF027333.1|AF027333 Rattus norvegicus thyroid-specific transcription factor 1 gene, promoter region and partial cds Length = 3056 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ccctgctcctcagccttctt 231 |||||||||||||||||||| Sbjct: 2315 ccctgctcctcagccttctt 2334
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 acaccctgctcctcagccttcttc 232 ||||||| |||||||||||||||| Sbjct: 952744 acaccctcctcctcagccttcttc 952721
>emb|BX469886.5| Zebrafish DNA sequence from clone CH211-127D20 in linkage group 19, complete sequence Length = 151598 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 attattcagaaaacaaaagc 51 |||||||||||||||||||| Sbjct: 41342 attattcagaaaacaaaagc 41361
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124294 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aacttccatggacggggcta 102 |||||||||||||||||||| Sbjct: 3168 aacttccatggacggggcta 3187
>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155927 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aacttccatggacggggcta 102 |||||||||||||||||||| Sbjct: 36202 aacttccatggacggggcta 36183
>gb|AC132481.4| Mus musculus BAC clone RP23-14I14 from 17, complete sequence Length = 225031 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttgtccacccttggaccct 269 |||||||||||||||||||| Sbjct: 163738 cttgtccacccttggaccct 163719
>gb|AC157784.2| Mus musculus chromosome 18, clone RP24-163C18, complete sequence Length = 182283 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 ttcaccagcatctccttgta 249 |||||||||||||||||||| Sbjct: 96309 ttcaccagcatctccttgta 96328 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,840,531 Number of Sequences: 3902068 Number of extensions: 3840531 Number of successful extensions: 72626 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72473 Number of HSP's gapped (non-prelim): 145 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)