ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
2dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
3dbj|AK120014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
4emb|AL732596.2| Human DNA sequence from clone RP11-48D14 on chro... 44 0.33
5ref|NM_002604.1| Homo sapiens phosphodiesterase 7A (PDE7A), tran... 42 1.3
6gb|AC055822.10| Homo sapiens chromosome 8, clone RP11-707M3, com... 42 1.3
7gb|AF332652.1|AF332652 Homo sapiens cAMP-specific cyclic nucleot... 42 1.3
8gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, co... 40 5.2
9ref|XM_633540.1| Dictyostelium discoideum hypothetical protein (... 40 5.2
10gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, com... 40 5.2
11gb|AC120002.24| Mus musculus chromosome 12, clone RP24-147D14, c... 40 5.2
12ref|XM_658803.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.2
13gb|AY578915.1| Ambystoma mexicanum receptor tyrosine kinase c-ki... 40 5.2
14gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosom... 40 5.2
15emb|Z97192.2|HS29C18 Human DNA sequence from clone RP1-29C18 on ... 40 5.2
16emb|CR381576.10| Zebrafish DNA sequence from clone DKEY-245F17 i... 40 5.2
17gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, comple... 40 5.2
18gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 40 5.2
19gb|AC124908.3| Equus caballus clone CH241-67M21, complete sequence 40 5.2
20gb|AC153927.6| Mus musculus 6 BAC RP23-74G1 (Roswell Park Cancer... 40 5.2
21dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
22gb|AC092679.2| Homo sapiens BAC clone RP11-676D22 from 2, comple... 40 5.2
23gb|AC157908.5| Mus musculus chromosome 18, clone RP24-286P2, com... 40 5.2
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
25gb|DP000020.1| Equus caballus target 1 genomic scaffold 40 5.2
26emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chr... 40 5.2
27emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chro... 40 5.2

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 224      ccgtcatcaatgaggacacgaagcatcacgggtcat 259
                |||||||||||||||||||| ||||||||| |||||
Sbjct: 28011066 ccgtcatcaatgaggacacggagcatcacgagtcat 28011101



to top

>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0019E03
          Length = 152092

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 224   ccgtcatcaatgaggacacgaagcatcacgggtcat 259
             |||||||||||||||||||| ||||||||| |||||
Sbjct: 26265 ccgtcatcaatgaggacacggagcatcacgagtcat 26300



to top

>dbj|AK120014.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-B05, full
            insert sequence
          Length = 2429

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 224  ccgtcatcaatgaggacacgaagcatcacgggtcat 259
            |||||||||||||||||||| ||||||||| |||||
Sbjct: 1691 ccgtcatcaatgaggacacggagcatcacgagtcat 1656



to top

>emb|AL732596.2| Human DNA sequence from clone RP11-48D14 on chromosome X, complete
             sequence
          Length = 89677

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 270   atgtgactatcctcccaaaaga 291
             ||||||||||||||||||||||
Sbjct: 20097 atgtgactatcctcccaaaaga 20076



to top

>ref|NM_002604.1| Homo sapiens phosphodiesterase 7A (PDE7A), transcript variant 2, mRNA
          Length = 2990

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 275  actatcctcccaaaagaaaag 295
            |||||||||||||||||||||
Sbjct: 2603 actatcctcccaaaagaaaag 2583



to top

>gb|AC055822.10| Homo sapiens chromosome 8, clone RP11-707M3, complete sequence
          Length = 202033

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 275   actatcctcccaaaagaaaag 295
             |||||||||||||||||||||
Sbjct: 80235 actatcctcccaaaagaaaag 80215



to top

>gb|AF332652.1|AF332652 Homo sapiens cAMP-specific cyclic nucleotide phosphodiesterase PDE7A3
            mRNA, complete cds
          Length = 2990

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 275  actatcctcccaaaagaaaag 295
            |||||||||||||||||||||
Sbjct: 2603 actatcctcccaaaagaaaag 2583



to top

>gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, complete sequence
          Length = 180451

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   ccaatcaacctccctctacc 383
             ||||||||||||||||||||
Sbjct: 82388 ccaatcaacctccctctacc 82407



to top

>ref|XM_633540.1| Dictyostelium discoideum hypothetical protein (DDB0186019), partial
            mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  tcaaccaatcaacctccctc 379
            ||||||||||||||||||||
Sbjct: 2340 tcaaccaatcaacctccctc 2359



to top

>gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, complete sequence
          Length = 242587

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ttggctctttaatttgggaa 52
              ||||||||||||||||||||
Sbjct: 116339 ttggctctttaatttgggaa 116358



to top

>gb|AC120002.24| Mus musculus chromosome 12, clone RP24-147D14, complete sequence
          Length = 179305

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    gaaagccacgcatgatagtgcagt 73
             |||||||| |||||||||||||||
Sbjct: 72353 gaaagccaagcatgatagtgcagt 72376



to top

>ref|XM_658803.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6291.2), mRNA
          Length = 3177

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   ttcgacaggtttggctcttt 42
            ||||||||||||||||||||
Sbjct: 2471 ttcgacaggtttggctcttt 2452



to top

>gb|AY578915.1| Ambystoma mexicanum receptor tyrosine kinase c-kit mRNA, complete cds
          Length = 6167

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  gtgactatcctcccaaaagaaaag 295
            ||||| ||||||||||||||||||
Sbjct: 4386 gtgaccatcctcccaaaagaaaag 4363



to top

>gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosome 7, complete sequence
          Length = 186858

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    tgggtcccatgtgactatcc 281
              ||||||||||||||||||||
Sbjct: 128850 tgggtcccatgtgactatcc 128869



to top

>emb|Z97192.2|HS29C18 Human DNA sequence from clone RP1-29C18 on chromosome 22, complete
              sequence
          Length = 143701

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    tcctcccaaaagaaaagggg 298
              ||||||||||||||||||||
Sbjct: 107405 tcctcccaaaagaaaagggg 107424



to top

>emb|CR381576.10| Zebrafish DNA sequence from clone DKEY-245F17 in linkage group 17,
             complete sequence
          Length = 185749

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    gacaggtttggctctttaat 45
             ||||||||||||||||||||
Sbjct: 58185 gacaggtttggctctttaat 58166



to top

>gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, complete sequence
          Length = 186092

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    ctcccaaaagaaaaggggcaacta 304
              |||||||||||||||||| |||||
Sbjct: 149780 ctcccaaaagaaaagggggaacta 149803



to top

>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 322   gctttaatttgcatttgcaaccca 345
             ||||||||||||||||| ||||||
Sbjct: 78525 gctttaatttgcatttgtaaccca 78548



to top

>gb|AC124908.3| Equus caballus clone CH241-67M21, complete sequence
          Length = 170710

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   actatcctcccaaaagaaaa 294
             ||||||||||||||||||||
Sbjct: 15455 actatcctcccaaaagaaaa 15436



to top

>gb|AC153927.6| Mus musculus 6 BAC RP23-74G1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 213    ataactgggcaccgtcatcaatga 236
              |||||||||||| |||||||||||
Sbjct: 154861 ataactgggcactgtcatcaatga 154838



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 322     gctttaatttgcatttgcaaccca 345
               ||||||||||||||||| ||||||
Sbjct: 9445041 gctttaatttgcatttgtaaccca 9445064



to top

>gb|AC092679.2| Homo sapiens BAC clone RP11-676D22 from 2, complete sequence
          Length = 90621

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  actttaaggctttaatttgcattt 337
            ||||||| ||||||||||||||||
Sbjct: 4577 actttaatgctttaatttgcattt 4554



to top

>gb|AC157908.5| Mus musculus chromosome 18, clone RP24-286P2, complete sequence
          Length = 161561

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ttggctctttaatttgggaa 52
             ||||||||||||||||||||
Sbjct: 17341 ttggctctttaatttgggaa 17322



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 322     gctttaatttgcatttgcaaccca 345
               ||||||||||||||||| ||||||
Sbjct: 9451080 gctttaatttgcatttgtaaccca 9451103



to top

>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 275     actatcctcccaaaagaaaa 294
               ||||||||||||||||||||
Sbjct: 1251147 actatcctcccaaaagaaaa 1251128



to top

>emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chromosome X, complete
             sequence
          Length = 203118

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    aggtttggctctttaatttgggaa 52
             ||||||||| ||||||||||||||
Sbjct: 64333 aggtttggccctttaatttgggaa 64356



to top

>emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chromosome 4, complete
              sequence
          Length = 161389

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     tggctctttaatttgggaaa 53
              ||||||||||||||||||||
Sbjct: 100907 tggctctttaatttgggaaa 100888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,370,835
Number of Sequences: 3902068
Number of extensions: 3370835
Number of successful extensions: 72576
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72465
Number of HSP's gapped (non-prelim): 111
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top