Clone Name | rbastl55f10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 224 ccgtcatcaatgaggacacgaagcatcacgggtcat 259 |||||||||||||||||||| ||||||||| ||||| Sbjct: 28011066 ccgtcatcaatgaggacacggagcatcacgagtcat 28011101
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0019E03 Length = 152092 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 224 ccgtcatcaatgaggacacgaagcatcacgggtcat 259 |||||||||||||||||||| ||||||||| ||||| Sbjct: 26265 ccgtcatcaatgaggacacggagcatcacgagtcat 26300
>dbj|AK120014.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-B05, full insert sequence Length = 2429 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 224 ccgtcatcaatgaggacacgaagcatcacgggtcat 259 |||||||||||||||||||| ||||||||| ||||| Sbjct: 1691 ccgtcatcaatgaggacacggagcatcacgagtcat 1656
>emb|AL732596.2| Human DNA sequence from clone RP11-48D14 on chromosome X, complete sequence Length = 89677 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 atgtgactatcctcccaaaaga 291 |||||||||||||||||||||| Sbjct: 20097 atgtgactatcctcccaaaaga 20076
>ref|NM_002604.1| Homo sapiens phosphodiesterase 7A (PDE7A), transcript variant 2, mRNA Length = 2990 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 actatcctcccaaaagaaaag 295 ||||||||||||||||||||| Sbjct: 2603 actatcctcccaaaagaaaag 2583
>gb|AC055822.10| Homo sapiens chromosome 8, clone RP11-707M3, complete sequence Length = 202033 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 actatcctcccaaaagaaaag 295 ||||||||||||||||||||| Sbjct: 80235 actatcctcccaaaagaaaag 80215
>gb|AF332652.1|AF332652 Homo sapiens cAMP-specific cyclic nucleotide phosphodiesterase PDE7A3 mRNA, complete cds Length = 2990 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 actatcctcccaaaagaaaag 295 ||||||||||||||||||||| Sbjct: 2603 actatcctcccaaaagaaaag 2583
>gb|AC117590.14| Mus musculus chromosome 3, clone RP23-225F12, complete sequence Length = 180451 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ccaatcaacctccctctacc 383 |||||||||||||||||||| Sbjct: 82388 ccaatcaacctccctctacc 82407
>ref|XM_633540.1| Dictyostelium discoideum hypothetical protein (DDB0186019), partial mRNA Length = 2505 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 tcaaccaatcaacctccctc 379 |||||||||||||||||||| Sbjct: 2340 tcaaccaatcaacctccctc 2359
>gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, complete sequence Length = 242587 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ttggctctttaatttgggaa 52 |||||||||||||||||||| Sbjct: 116339 ttggctctttaatttgggaa 116358
>gb|AC120002.24| Mus musculus chromosome 12, clone RP24-147D14, complete sequence Length = 179305 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 gaaagccacgcatgatagtgcagt 73 |||||||| ||||||||||||||| Sbjct: 72353 gaaagccaagcatgatagtgcagt 72376
>ref|XM_658803.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6291.2), mRNA Length = 3177 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttcgacaggtttggctcttt 42 |||||||||||||||||||| Sbjct: 2471 ttcgacaggtttggctcttt 2452
>gb|AY578915.1| Ambystoma mexicanum receptor tyrosine kinase c-kit mRNA, complete cds Length = 6167 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gtgactatcctcccaaaagaaaag 295 ||||| |||||||||||||||||| Sbjct: 4386 gtgaccatcctcccaaaagaaaag 4363
>gb|AC130210.4| Mus musculus BAC clone RP24-344N22 from chromosome 7, complete sequence Length = 186858 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tgggtcccatgtgactatcc 281 |||||||||||||||||||| Sbjct: 128850 tgggtcccatgtgactatcc 128869
>emb|Z97192.2|HS29C18 Human DNA sequence from clone RP1-29C18 on chromosome 22, complete sequence Length = 143701 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 tcctcccaaaagaaaagggg 298 |||||||||||||||||||| Sbjct: 107405 tcctcccaaaagaaaagggg 107424
>emb|CR381576.10| Zebrafish DNA sequence from clone DKEY-245F17 in linkage group 17, complete sequence Length = 185749 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gacaggtttggctctttaat 45 |||||||||||||||||||| Sbjct: 58185 gacaggtttggctctttaat 58166
>gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, complete sequence Length = 186092 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ctcccaaaagaaaaggggcaacta 304 |||||||||||||||||| ||||| Sbjct: 149780 ctcccaaaagaaaagggggaacta 149803
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 gctttaatttgcatttgcaaccca 345 ||||||||||||||||| |||||| Sbjct: 78525 gctttaatttgcatttgtaaccca 78548
>gb|AC124908.3| Equus caballus clone CH241-67M21, complete sequence Length = 170710 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 actatcctcccaaaagaaaa 294 |||||||||||||||||||| Sbjct: 15455 actatcctcccaaaagaaaa 15436
>gb|AC153927.6| Mus musculus 6 BAC RP23-74G1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211584 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 ataactgggcaccgtcatcaatga 236 |||||||||||| ||||||||||| Sbjct: 154861 ataactgggcactgtcatcaatga 154838
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 gctttaatttgcatttgcaaccca 345 ||||||||||||||||| |||||| Sbjct: 9445041 gctttaatttgcatttgtaaccca 9445064
>gb|AC092679.2| Homo sapiens BAC clone RP11-676D22 from 2, complete sequence Length = 90621 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 actttaaggctttaatttgcattt 337 ||||||| |||||||||||||||| Sbjct: 4577 actttaatgctttaatttgcattt 4554
>gb|AC157908.5| Mus musculus chromosome 18, clone RP24-286P2, complete sequence Length = 161561 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ttggctctttaatttgggaa 52 |||||||||||||||||||| Sbjct: 17341 ttggctctttaatttgggaa 17322
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 gctttaatttgcatttgcaaccca 345 ||||||||||||||||| |||||| Sbjct: 9451080 gctttaatttgcatttgtaaccca 9451103
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 actatcctcccaaaagaaaa 294 |||||||||||||||||||| Sbjct: 1251147 actatcctcccaaaagaaaa 1251128
>emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chromosome X, complete sequence Length = 203118 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aggtttggctctttaatttgggaa 52 ||||||||| |||||||||||||| Sbjct: 64333 aggtttggccctttaatttgggaa 64356
>emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chromosome 4, complete sequence Length = 161389 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 tggctctttaatttgggaaa 53 |||||||||||||||||||| Sbjct: 100907 tggctctttaatttgggaaa 100888 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,370,835 Number of Sequences: 3902068 Number of extensions: 3370835 Number of successful extensions: 72576 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72465 Number of HSP's gapped (non-prelim): 111 length of query: 386 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 364 effective length of database: 17,147,199,772 effective search space: 6241580717008 effective search space used: 6241580717008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)