ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109652.1| Zea mays CL2578_1 mRNA sequence 80 6e-12
2gb|U41996.1| Caenorhabditis elegans cosmid F38E1, complete sequence 44 0.34
3emb|AL160290.15| Human DNA sequence from clone RP11-338O1 on chr... 44 0.34
4gb|AC115624.2| Homo sapiens BAC clone RP11-536N3 from 4, complet... 44 0.34
5ref|XM_473779.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
6ref|XM_786287.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.3
7gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Canc... 42 1.3
8emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in... 42 1.3
9gb|AC016768.10| Homo sapiens BAC clone RP11-560C7 from 2, comple... 42 1.3
10ref|XM_228162.3| PREDICTED: Rattus norvegicus radial spokehead-l... 42 1.3
11dbj|AK100925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
12dbj|AK060878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
13emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chr... 42 1.3
14ref|XM_514061.1| PREDICTED: Pan troglodytes LOC457586 (LOC457586... 40 5.3
15gb|AY744399.1| Uncultured alpha proteobacterium EBAC2C11, comple... 40 5.3
16gb|AC151117.4| Bos taurus BAC CH240-85N4 (Children's Hospital O... 40 5.3
17gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, comp... 40 5.3
18ref|NM_031935.1| Homo sapiens hemicentin 1 (HMCN1), mRNA 40 5.3
19ref|XM_454672.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E16104g ... 40 5.3
20ref|XM_993152.1| PREDICTED: Mus musculus radial spokehead-like 3... 40 5.3
21ref|XM_906805.2| PREDICTED: Mus musculus radial spokehead-like 3... 40 5.3
22ref|XM_137041.6| PREDICTED: Mus musculus radial spokehead-like 3... 40 5.3
23ref|XM_547438.2| PREDICTED: Canis familiaris similar to High Inc... 40 5.3
24gb|AC152057.11| Medicago truncatula clone mth2-25a12, complete s... 40 5.3
25emb|AL592444.18| Human DNA sequence from clone RP11-178P20 on ch... 40 5.3
26emb|AL161911.17| Human DNA sequence from clone RP11-27I1 on chro... 40 5.3
27emb|AL135797.10| Human DNA sequence from clone GS1-77J13 on chro... 40 5.3
28emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.3
29emb|AJ306906.1|HSA306906 Homo sapiens partial mRNA for fibulin-6... 40 5.3
30gb|AC079623.15| Homo sapiens 3 BAC RP11-201D16 (Roswell Park Can... 40 5.3
31gb|AF156100.1|AF156100 Homo sapiens hemicentin mRNA, complete cds 40 5.3
32dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
34dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
35emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in... 40 5.3
36dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
37dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
38gb|AC153961.2| Mus musculus 10 BAC RP24-330I16 (Roswell Park Can... 40 5.3
39dbj|AK071936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
40emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in... 40 5.3
41emb|CT025923.7| Zebrafish DNA sequence from clone CH73-197B9 in ... 40 5.3
42gb|AC002499.1|AC002499 Human Cosmid g5129s435 from 7q31.3, compl... 40 5.3 
>gb|AY109652.1| Zea mays CL2578_1 mRNA sequence
          Length = 1512

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 109/132 (82%)
 Strand = Plus / Plus

                                                                       
Query: 198 ctaaaatatgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaa 257
           |||||| |||||||||||||| ||||| | ||| || || | || ||| |  ||||||||
Sbjct: 289 ctaaaagatgctcccataatcctttcttgcaagagatgaagataacccacttgtcgtaaa 348

                                                                       
Query: 258 tggatgcacgcctgttcctccccagggcactccctcccccatgccatagggaggccatgc 317
           ||  ||| | ||||||||||||||||||||||| || ||||||||| |   |||||| ||
Sbjct: 349 tgagtgccctcctgttcctccccagggcactccatcgcccatgccaaaactaggccacgc 408

                       
Query: 318 aggctgcccact 329
           ||||||||||||
Sbjct: 409 aggctgcccact 420
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>gb|U41996.1| Caenorhabditis elegans cosmid F38E1, complete sequence
          Length = 32277

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 17  attctattatatatcatagagt 38
           ||||||||||||||||||||||
Sbjct: 834 attctattatatatcatagagt 813
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>emb|AL160290.15| Human DNA sequence from clone RP11-338O1 on chromosome 10 Contains a
             novel gene and the 5' end of a novel gene, complete
             sequence
          Length = 201397

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 99    gaaagaaaaggaaaatcaatag 120
             ||||||||||||||||||||||
Sbjct: 45753 gaaagaaaaggaaaatcaatag 45732
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>gb|AC115624.2| Homo sapiens BAC clone RP11-536N3 from 4, complete sequence
          Length = 64626

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 198   ctaaaatatgctcccataatct 219
             ||||||||||||||||||||||
Sbjct: 35474 ctaaaatatgctcccataatct 35495
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>ref|XM_473779.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2775

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                        
Query: 205  atgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaatggatgc 264
            |||||||| ||||| ||||| ||||| || || ||||||||    || ||||||||||||
Sbjct: 2768 atgctcccgtaatcctttcttggaagagatgaaggtagcccagttgtggtaaatggatgc 2709

                                 
Query: 265  acgcctgttcctccccagggc 285
             | |  |||||||||||||||
Sbjct: 2708 ccactcgttcctccccagggc 2688
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>ref|XM_786287.1| PREDICTED: Strongylocentrotus purpuratus similar to Coiled-coil
            domain containing protein 11 (LOC586508), mRNA
          Length = 2384

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 305  agggaggccatgcaggctgcc 325
            |||||||||||||||||||||
Sbjct: 1042 agggaggccatgcaggctgcc 1062
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>gb|AC068992.31| Homo sapiens 8 BAC RP11-406I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 143611

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 8     taaccatcgattctattatatatca 32
             ||||||||||||||||||| |||||
Sbjct: 61568 taaccatcgattctattatttatca 61544
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>emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in linkage group 15,
              complete sequence
          Length = 185865

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 205    atgctcccataatcttttctg 225
              |||||||||||||||||||||
Sbjct: 133113 atgctcccataatcttttctg 133093
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>gb|AC016768.10| Homo sapiens BAC clone RP11-560C7 from 2, complete sequence
          Length = 184451

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 96    caggaaagaaaaggaaaatcaatag 120
             |||||||||||||| ||||||||||
Sbjct: 77008 caggaaagaaaagggaaatcaatag 77032
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>ref|XM_228162.3| PREDICTED: Rattus norvegicus radial spokehead-like 3 (predicted)
           (Rshl3_predicted), mRNA
          Length = 2136

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 101 aagaaaaggaaaatcaatagccaga 125
           ||||||||||||||||| |||||||
Sbjct: 26  aagaaaaggaaaatcaagagccaga 50
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>dbj|AK100925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134G14, full
            insert sequence
          Length = 3611

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                        
Query: 205  atgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaatggatgc 264
            |||||||| ||||| ||||| ||||| || || ||||||||    || ||||||||||||
Sbjct: 3407 atgctcccgtaatcctttcttggaagagatgaaggtagcccagttgtggtaaatggatgc 3348

                                 
Query: 265  acgcctgttcctccccagggc 285
             | |  |||||||||||||||
Sbjct: 3347 ccactcgttcctccccagggc 3327
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>dbj|AK060878.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A07, full
            insert sequence
          Length = 1242

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                        
Query: 205  atgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaatggatgc 264
            |||||||| ||||| ||||| ||||| || || ||||||||    || ||||||||||||
Sbjct: 1038 atgctcccgtaatcctttcttggaagagatgaaggtagcccagttgtggtaaatggatgc 979

                                 
Query: 265  acgcctgttcctccccagggc 285
             | |  |||||||||||||||
Sbjct: 978  ccactcgttcctccccagggc 958
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>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete
             sequence
          Length = 206914

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    ggaaagaaaaggaaaatcaat 118
             |||||||||||||||||||||
Sbjct: 43692 ggaaagaaaaggaaaatcaat 43712
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>ref|XM_514061.1| PREDICTED: Pan troglodytes LOC457586 (LOC457586), mRNA
          Length = 16326

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagcaacattgcaggaaaga 104
             ||||||||||||||||||||
Sbjct: 10554 cagcaacattgcaggaaaga 10573
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>gb|AY744399.1| Uncultured alpha proteobacterium EBAC2C11, complete sequence
          Length = 102726

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 201   aaatatgctcccataatcttttct 224
             |||||||||||| |||||||||||
Sbjct: 88454 aaatatgctcccttaatcttttct 88477
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>gb|AC151117.4| Bos taurus  BAC CH240-85N4 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 199710

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aggaaagaaaaggaaaatca 116
             ||||||||||||||||||||
Sbjct: 73284 aggaaagaaaaggaaaatca 73303
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>gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, complete sequence
          Length = 188453

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     gaaagaaaaggaaaatcaat 118
              ||||||||||||||||||||
Sbjct: 151600 gaaagaaaaggaaaatcaat 151619
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>ref|NM_031935.1| Homo sapiens hemicentin 1 (HMCN1), mRNA
          Length = 18209

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagcaacattgcaggaaaga 104
             ||||||||||||||||||||
Sbjct: 11314 cagcaacattgcaggaaaga 11333
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>ref|XM_454672.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E16104g predicted mRNA
          Length = 3261

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    taaccatcgattctattata 27
            ||||||||||||||||||||
Sbjct: 1309 taaccatcgattctattata 1290
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>ref|XM_993152.1| PREDICTED: Mus musculus radial spokehead-like 3 (Rshl3), mRNA
          Length = 3605

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 101 aagaaaaggaaaatcaatagccag 124
           ||||||||||||||||| ||||||
Sbjct: 26  aagaaaaggaaaatcaagagccag 49
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>ref|XM_906805.2| PREDICTED: Mus musculus radial spokehead-like 3 (Rshl3), mRNA
          Length = 3605

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 101 aagaaaaggaaaatcaatagccag 124
           ||||||||||||||||| ||||||
Sbjct: 26  aagaaaaggaaaatcaagagccag 49
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>ref|XM_137041.6| PREDICTED: Mus musculus radial spokehead-like 3 (Rshl3), mRNA
          Length = 3605

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 101 aagaaaaggaaaatcaatagccag 124
           ||||||||||||||||| ||||||
Sbjct: 26  aagaaaaggaaaatcaagagccag 49
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>ref|XM_547438.2| PREDICTED: Canis familiaris similar to High Incidence of Males
             (increased X chromosome loss) family member (him-4)
             (LOC490318), mRNA
          Length = 17440

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagcaacattgcaggaaaga 104
             ||||||||||||||||||||
Sbjct: 11088 cagcaacattgcaggaaaga 11107
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>gb|AC152057.11| Medicago truncatula clone mth2-25a12, complete sequence
          Length = 108797

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aggaaagaaaaggaaaatca 116
             ||||||||||||||||||||
Sbjct: 77413 aggaaagaaaaggaaaatca 77394
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>emb|AL592444.18| Human DNA sequence from clone RP11-178P20 on chromosome 6 Contains the
             5' end of the TCP10 gene for t-complex 10 (mouse) and a
             CpG island, complete sequence
          Length = 74279

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   ctccctcccccatgccatagggag 310
             ||||||||||||||||||| ||||
Sbjct: 49278 ctccctcccccatgccataaggag 49255
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>emb|AL161911.17| Human DNA sequence from clone RP11-27I1 on chromosome 9 Contains the
             FBXW2 gene for F-box and WD-40 domain protein 2 (FBW2),
             two novel genes, a UDP-Gal:betaGlcNAc beta
             1,3-galactosyltransferase, polypeptide 3 (B3GALT3)
             pseudogene, the PSMD5 gene for proteasome (prosome,
             macropain) 26S subunit, non-ATPase, 5 (S5B, KIAA0072,
             MGC23145), the 3' end of a novel gene (DKFZP727G051) and
             two CpG islands, complete sequence
          Length = 109176

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    caggaaagaaaaggaaaatc 115
             ||||||||||||||||||||
Sbjct: 63079 caggaaagaaaaggaaaatc 63098
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>emb|AL135797.10| Human DNA sequence from clone GS1-77J13 on chromosome 1 Contains part
             of the gene for hemicentin, complete sequence
          Length = 41219

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagcaacattgcaggaaaga 104
             ||||||||||||||||||||
Sbjct: 14778 cagcaacattgcaggaaaga 14797
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       taaccatcgattctattata 27
               ||||||||||||||||||||
Sbjct: 1430683 taaccatcgattctattata 1430702
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>emb|AJ306906.1|HSA306906 Homo sapiens partial mRNA for fibulin-6 (FIBL-6 gene)
          Length = 8546

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   cagcaacattgcaggaaaga 104
            ||||||||||||||||||||
Sbjct: 2196 cagcaacattgcaggaaaga 2215
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>gb|AC079623.15| Homo sapiens 3 BAC RP11-201D16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 201451

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aggaaagaaaaggaaaatca 116
             ||||||||||||||||||||
Sbjct: 42669 aggaaagaaaaggaaaatca 42650
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>gb|AF156100.1|AF156100 Homo sapiens hemicentin mRNA, complete cds
          Length = 18207

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagcaacattgcaggaaaga 104
             ||||||||||||||||||||
Sbjct: 11314 cagcaacattgcaggaaaga 11333
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                           
Query: 287     ctccctcccccatgccatagggaggcca 314
               |||||||||||||||| |||||||||||
Sbjct: 1278931 ctccctcccccatgcc-tagggaggcca 1278905
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 96       caggaaagaaaaggaaaatc 115
                ||||||||||||||||||||
Sbjct: 23877567 caggaaagaaaaggaaaatc 23877548
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>dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0598D02
          Length = 155238

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 287   ctccctcccccatgccatagggaggcca 314
             |||||||||||||||| |||||||||||
Sbjct: 49935 ctccctcccccatgcc-tagggaggcca 49909
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>emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in linkage group 18,
             complete sequence
          Length = 150365

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    aggaaagaaaaggaaaatcaatag 120
             ||||||||||||||||| ||||||
Sbjct: 61888 aggaaagaaaaggaaaaacaatag 61911
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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    caggaaagaaaaggaaaatc 115
             ||||||||||||||||||||
Sbjct: 23971 caggaaagaaaaggaaaatc 23952
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>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0563F09
          Length = 174905

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 287    ctccctcccccatgccatagggaggcca 314
              |||||||||||||||| |||||||||||
Sbjct: 109805 ctccctcccccatgcc-tagggaggcca 109779
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>gb|AC153961.2| Mus musculus 10 BAC RP24-330I16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 159792

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 101   aagaaaaggaaaatcaatagccag 124
             ||||||||||||||||| ||||||
Sbjct: 21827 aagaaaaggaaaatcaagagccag 21804
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>dbj|AK071936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074A19, full
           insert sequence
          Length = 2033

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 287 ctccctcccccatgccatagggaggcca 314
           |||||||||||||||| |||||||||||
Sbjct: 60  ctccctcccccatgcc-tagggaggcca 86
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>emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in linkage group 18,
              complete sequence
          Length = 263615

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 97     aggaaagaaaaggaaaatcaatag 120
              ||||||||||||||||| ||||||
Sbjct: 154015 aggaaagaaaaggaaaaacaatag 154038
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>emb|CT025923.7| Zebrafish DNA sequence from clone CH73-197B9 in linkage group 18,
            complete sequence
          Length = 44068

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 97   aggaaagaaaaggaaaatcaatag 120
            ||||||||||||||||| ||||||
Sbjct: 7252 aggaaagaaaaggaaaaacaatag 7229
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>gb|AC002499.1|AC002499 Human Cosmid g5129s435 from 7q31.3, complete sequence
          Length = 41052

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tgcaggaaagaaaaggaaaa 113
             ||||||||||||||||||||
Sbjct: 26804 tgcaggaaagaaaaggaaaa 26823


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,753,742
Number of Sequences: 3902068
Number of extensions: 3753742
Number of successful extensions: 112813
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 112673
Number of HSP's gapped (non-prelim): 147
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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