>dbj|AK100534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N06, full
            insert sequence
          Length = 3665

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 371  ctataacttcacatacttgtcaacataacccatta 405
            ||||| ||||||||| ||||||||||| |||||||
Sbjct: 3266 ctatagcttcacatatttgtcaacatagcccatta 3232

>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence
          Length = 199569

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 245    aaaggactttctcatgcaaatagatg 270
              ||||||||||||||||||||| ||||
Sbjct: 195428 aaaggactttctcatgcaaattgatg 195403

>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence
          Length = 157375

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 245   aaaggactttctcatgcaaatagatg 270
             ||||||||||||||||||||| ||||
Sbjct: 41292 aaaggactttctcatgcaaattgatg 41317

>gb|AC015804.14| Homo sapiens chromosome 17, clone RP11-637C24, complete sequence
          Length = 200452

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 243    gtaaaggactttctcatgcaaa 264
              ||||||||||||||||||||||
Sbjct: 157305 gtaaaggactttctcatgcaaa 157326

>gb|AC145163.5| Mus musculus BAC clone RP24-238C5 from chromosome 12, complete sequence
          Length = 194429

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 320    acttctacaactgcaaaggaagtctcttct 349
              |||| ||||| |||||||||||||||||||
Sbjct: 117316 acttgtacaagtgcaaaggaagtctcttct 117345

>gb|AC132189.13| Mus musculus chromosome 12, clone RP24-95M20, complete sequence
          Length = 203534

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 320    acttctacaactgcaaaggaagtctcttct 349
              |||| ||||| |||||||||||||||||||
Sbjct: 184862 acttgtacaagtgcaaaggaagtctcttct 184891

>emb|AL929434.3| Zebrafish DNA sequence from clone CH211-127L15, complete sequence
          Length = 178948

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 111   aagaaatatcaacaaagtgctt 132
             ||||||||||||||||||||||
Sbjct: 51025 aagaaatatcaacaaagtgctt 51046

>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5
          Length = 178420

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 245   aaaggactttctcatgcaaatagatg 270
             ||||||||||||||||||||| ||||
Sbjct: 42915 aaaggactttctcatgcaaattgatg 42940

>gb|U06670.1|MMU06670 Mus musculus very low density lipoprotein receptor mRNA, complete cds
          Length = 3283

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 112  agaaatatcaacaaagtgctt 132
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185

>gb|U28736.1| Caenorhabditis elegans cosmid F26A10, complete sequence
          Length = 38482

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   acttacaagaataccttcttg 243
             |||||||||||||||||||||
Sbjct: 29978 acttacaagaataccttcttg 29958

>ref|NM_013703.1| Mus musculus very low density lipoprotein receptor (Vldlr), mRNA
          Length = 3283

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 112  agaaatatcaacaaagtgctt 132
            |||||||||||||||||||||
Sbjct: 3205 agaaatatcaacaaagtgctt 3185

>gb|AY110799.1| Zea mays CL4694_1 mRNA sequence
          Length = 761

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 377 cttcacatacttgtcaacataacccatta 405
           ||||||||||||||| ||||| |||||||
Sbjct: 249 cttcacatacttgtcgacataccccatta 221

>gb|AC154512.2| Mus musculus BAC clone RP24-70L20 from chromosome 16, complete sequence
          Length = 166329

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 88    acacagtgttgggtggaaagggaaa 112
             ||||||||||| |||||||||||||
Sbjct: 65426 acacagtgttgagtggaaagggaaa 65450

>gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosome 14, complete sequence
          Length = 195425

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    atgtttaaacacatgattct 202
              ||||||||||||||||||||
Sbjct: 156209 atgtttaaacacatgattct 156190

>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence
          Length = 183140

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    tgtttaaacacatgattcta 203
              ||||||||||||||||||||
Sbjct: 133895 tgtttaaacacatgattcta 133876

>emb|CR555294.10| Zebrafish DNA sequence from clone CH211-169P4 in linkage group 19,
              complete sequence
          Length = 142042

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     catgttcatgaaaccagtgcaaga 52
              |||||||||||||||||| |||||
Sbjct: 104797 catgttcatgaaaccagtccaaga 104774

>emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-001A02, complete sequence
          Length = 186572

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   cttcacatacttgtcaacat 396
             ||||||||||||||||||||
Sbjct: 60734 cttcacatacttgtcaacat 60715

>emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on chromosome 10, complete
             sequence
          Length = 139968

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 333   caaaggaagtctcttctgattggc 356
             ||||||| ||||||||||||||||
Sbjct: 84041 caaaggatgtctcttctgattggc 84064

>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 242500

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    tgtaaaggactttctcatgc 261
              ||||||||||||||||||||
Sbjct: 202855 tgtaaaggactttctcatgc 202836

>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the
             3' end of the Nipsnap1 gene for 4-nitrophenylphosphatase
             domain and non-neuronal SNAP25-like protein homolog 1 (C.
             elegans), a novel gene, a ribosomal protein L17 (Rpl17)
             pseudogene, the Nefh gene for neurofilament heavy
             polypeptide, the Ap1b1 gene for adaptor protein complex
             AP-1 beta 1 subunit, the gene for the ortholog of human
             RAS-related protein on chromosome 22, the gene for the
             ortholog of human growth arrest-specific 2 like 1 GAS2L1
             and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   ttctacaactgcaaaggaag 341
             ||||||||||||||||||||
Sbjct: 42628 ttctacaactgcaaaggaag 42609

>gb|AC011353.5| Homo sapiens chromosome 5 clone CTC-328A6, complete sequence
          Length = 143527

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   gaaagggaaagaaatatcaa 122
             ||||||||||||||||||||
Sbjct: 54556 gaaagggaaagaaatatcaa 54575

>gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 161874

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  cttcacatacttgtcaacat 396
            ||||||||||||||||||||
Sbjct: 4858 cttcacatacttgtcaacat 4839

>emb|AL114032.1|CNS01BBS Botrytis cinerea strain T4 cDNA library
          Length = 396

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  ggtggaaagggaaagaaata 118
           ||||||||||||||||||||
Sbjct: 218 ggtggaaagggaaagaaata 237

>gb|AC055876.16| Homo sapiens chromosome 15, clone RP11-578F21, complete sequence
          Length = 192533

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    gtggaaagggaaagaaatat 119
              ||||||||||||||||||||
Sbjct: 153707 gtggaaagggaaagaaatat 153688

>emb|AL591905.10| Mouse DNA sequence from clone RP23-152H17 on chromosome 2, complete
              sequence
          Length = 194013

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    tgtttaaacacatgattcta 203
              ||||||||||||||||||||
Sbjct: 161820 tgtttaaacacatgattcta 161801

>emb|BX928740.16| Zebrafish DNA sequence from clone CH211-245J22 in linkage group 18,
             complete sequence
          Length = 154133

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   aaactgatgtttaaacacat 196
             ||||||||||||||||||||
Sbjct: 39008 aaactgatgtttaaacacat 38989

>emb|CT485784.2| RP43-026J01, complete sequence
          Length = 201375

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    cttcacatacttgtcaacat 396
              ||||||||||||||||||||
Sbjct: 169038 cttcacatacttgtcaacat 169019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,256,563
Number of Sequences: 3902068
Number of extensions: 4256563
Number of successful extensions: 118329
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118281
Number of HSP's gapped (non-prelim): 48
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)