ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55f05 |
|---|---|
| Clone Library Name | barley_pub |
>YLK2_CAEEL (P41950) Hypothetical protein D1044.2 precursor| Length = 1090 Score = 30.8 bits (68), Expect = 0.90 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Frame = +3 Query: 48 RVHTQAFSLF*PAEAEPSSFL-TSSSIPDA--SKESDVQVQQPA*TLHMEPSKPKRPN 212 + HT ++ P EA PS F+ T++ P A + + + VQQP+ ++ +P K + N Sbjct: 884 KAHTTTTTMMIPTEAPPSIFVFTTTQKPRAQSTTQKRIIVQQPSIVVNSQPPKQRNDN 941
>MATN2_HUMAN (O00339) Matrilin-2 precursor| Length = 956 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 37 CTRDACIHR-----PSVFFNLQKQNHLRSSPPAPSPMQAKNQTCRCSNL 168 C+ A HR ++ + QK +H S+ P+ SP++ K+ C+C NL Sbjct: 875 CSNFAVQHRYLFEEDNLLRSTQKLSH--STKPSGSPLEEKHDQCKCENL 921
>CASR_BOVIN (P35384) Extracellular calcium-sensing receptor precursor (CaSR)| (Parathyroid Cell calcium-sensing receptor) Length = 1085 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/43 (32%), Positives = 17/43 (39%) Frame = +2 Query: 107 PHLQLHPRCKQRIRRAGAATCMNSSHGTIQTQATKHNESDHYT 235 P Q PRCKQ++ + S Q A H S H T Sbjct: 961 PQSQQPPRCKQKVIFGSGTVTFSLSFDEPQKTAVAHRNSTHQT 1003
>S23A2_MOUSE (Q9EPR4) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (mSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) Length = 647 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 56 YTGLQSFLTCRSRTIFVPHLQLHPRC 133 + GLQ +LTC S TI VP L C Sbjct: 103 FLGLQHYLTCFSGTIAVPFLLADAMC 128
>THCB_RHOER (P43492) Cytochrome P450 116 (EC 1.14.-.-)| Length = 436 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +1 Query: 145 QTCRCSNLHE-LFTWNHPNPSDQTQ 216 +TCR + + LFTW HP +QT+ Sbjct: 181 ETCRQYGMQQTLFTWGHPTGDEQTR 205
>CHFR_MOUSE (Q810L3) Ubiquitin-protein ligase CHFR (EC 6.3.2.-) (Checkpoint| with forkhead and RING finger domains protein) Length = 664 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 11/47 (23%) Frame = +1 Query: 148 TCRC-----------SNLHELFTWNHPNPSDQTQ*IRSLHARANVTR 255 TCRC +NL E + HP+ S + +RS+ AR +T+ Sbjct: 340 TCRCPVERICKNHILNNLVEAYLIQHPDKSRSEEDVRSMDARNKITQ 386
>Y1030_TREPA (O83993) Hypothetical protein TP1030| Length = 165 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +1 Query: 109 SPPAPSPMQAKNQTCRCSNL--HELFTWNHPNPSDQT 213 +P + +P A+ +T RCS+L H +FT P P T Sbjct: 62 NPGSSAPAPAQKKTARCSSLPTHFIFTTPPPPPVSST 98
>S23A2_HUMAN (Q9UGH3) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) Length = 650 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 56 YTGLQSFLTCRSRTIFVPHLQLHPRC 133 + GLQ +LTC S TI VP L C Sbjct: 104 FLGLQHYLTCFSGTIAVPFLLADAMC 129
>S23A2_RAT (Q9WTW8) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (Na(+)/L-ascorbic acid transporter 2) Length = 592 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +2 Query: 56 YTGLQSFLTCRSRTIFVPHLQLHPRC 133 + GLQ +LTC S TI VP L C Sbjct: 48 FLGLQHYLTCFSGTIAVPFLLADAMC 73
>DA_DROME (P11420) Protein daughterless| Length = 710 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = +3 Query: 42 KRRVHTQAFSLF*PAEAEPSSFLTSSSIPDASKESDVQVQQPA*TLHMEPSKPKRP 209 KR+ HT A S PA +S LTS I D S ++ H + KRP Sbjct: 476 KRKEHT-AISNSVPAGVSTTSSLTSLDISDTKPTSSIESSNSGLQQHSQGKGTKRP 530
>KDTA_CHLPN (Q46222) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)| (KDO transferase) Length = 437 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +2 Query: 77 LTCRSRTIFVPHLQLHPRCKQRIRRAGAATCMNSSHGTIQT 199 L C IF PH+ QR+ +GA C++ I T Sbjct: 351 LQCEVPLIFGPHITSQSELAQRLLLSGAGLCLDEIEPIIDT 391
>YKAD_CAEEL (P34263) Hypothetical protein B0303.14| Length = 407 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +3 Query: 81 PAEAEPSSFLTSSSIPDASKESDVQVQQPA*TLHMEPSKPKRPNTMNQI 227 P EAEP S T+S P++S S + +Q +PS R N NQ+ Sbjct: 11 PGEAEPQSSSTNSRAPESSSSSQ-ETRQQNLANRFKPSNNYRSN-RNQV 57
>GPMI2_METAC (Q8TIY2) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (BPG-independent PGAM 2) (iPGM 2) Length = 521 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/79 (22%), Positives = 31/79 (39%) Frame = +2 Query: 2 NCKNMLNLGTDGVQETRAYTGLQSFLTCRSRTIFVPHLQLHPRCKQRIRRAGAATCMNSS 181 N NM +G G+ E A +++ TC R I + +++AG + + Sbjct: 405 NFANMDMVGHTGIFEA-AVQAVEAVDTCVGRII------------EALKKAGGVALITAD 451 Query: 182 HGTIQTQATKHNESDHYTH 238 HG + +H H H Sbjct: 452 HGNAEQMENQHTGEPHTAH 470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,885,759 Number of Sequences: 219361 Number of extensions: 969768 Number of successful extensions: 2354 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2302 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2353 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
