Clone Name | rbastl55f05 |
---|---|
Clone Library Name | barley_pub |
>gb|AF306827.1|AF306827 Triticum monococcum subsp. monococcum clone 437 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Plus Query: 1 gaactgcaaaaacatgttaaatttaggaacagatggtgta 40 ||||||||||||| | ||| ||||||||||||| |||||| Sbjct: 731 gaactgcaaaaacgtcttatatttaggaacagagggtgta 770
>emb|AL359375.16| Human DNA sequence from clone RP11-93K18 on chromosome 10, complete sequence Length = 126846 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 actgcaaaaacatgttaaatt 23 ||||||||||||||||||||| Sbjct: 113496 actgcaaaaacatgttaaatt 113516
>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12 Contains the 3' end of the gene for sister-of-mammalian grainyhead (SOM), a novel gene (LOC90529) and a novel gene (DJ462O23.2), complete sequence Length = 154154 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 cttcagtcttttttaacctgc 85 ||||||||||||||||||||| Sbjct: 30026 cttcagtcttttttaacctgc 30006
>gb|AC158581.2| Mus musculus chromosome 3, clone RP24-264G1, complete sequence Length = 166808 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 tgctgagacatccatcatcca 297 ||||||||||||||||||||| Sbjct: 107588 tgctgagacatccatcatcca 107608
>gb|AC079269.8| Homo sapiens chromosome 10 clone RP11-379L21, complete sequence Length = 196004 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 actgcaaaaacatgttaaatt 23 ||||||||||||||||||||| Sbjct: 92826 actgcaaaaacatgttaaatt 92846
>gb|AC102278.10| Mus musculus chromosome 3, clone RP24-298A6, complete sequence Length = 184908 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 tgctgagacatccatcatcca 297 ||||||||||||||||||||| Sbjct: 11976 tgctgagacatccatcatcca 11956
>gb|DQ400416.1| Triticum aestivum starch synthase IV (SSIV) gene, complete cds Length = 7137 Score = 40.1 bits (20), Expect = 4.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 2 aactgcaaaaacatgttaaatttaggaacagatggtgtacaaga 45 |||||| ||||| | ||| ||||||||||||| |||||| |||| Sbjct: 2844 aactgccaaaacgtcttacatttaggaacagagggtgtagaaga 2801
>gb|AC144948.3| Mus musculus BAC clone RP23-119D7 from chromosome 6, complete sequence Length = 213811 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 gaactgcaaaaacatgttaaattt 24 |||||||||| ||||||||||||| Sbjct: 84569 gaactgcaaagacatgttaaattt 84546
>gb|BC092191.1| Rattus norvegicus cDNA clone IMAGE:7111416, **** WARNING: chimeric clone **** Length = 4570 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 ttcgttcctcacctccagctccat 124 |||||||||| ||||||||||||| Sbjct: 3089 ttcgttcctctcctccagctccat 3112
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 catcatccatgacacatttt 308 |||||||||||||||||||| Sbjct: 1431210 catcatccatgacacatttt 1431229
>emb|BX927372.14| Zebrafish DNA sequence from clone CH211-241H14 in linkage group 13, complete sequence Length = 138336 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 accaaacacaatgaatcagatcac 229 ||||||||||||||| |||||||| Sbjct: 18801 accaaacacaatgaaccagatcac 18778
>gb|AF306829.1|AF306829 Triticum urartu clone 581 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 40.1 bits (20), Expect = 4.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 1 gaactgcaaaaacatgttaaatttaggaacagatggtgta 40 ||||| ||||||| | ||| ||||||||||||| |||||| Sbjct: 731 gaactacaaaaacgtcttatatttaggaacagagggtgta 770
>gb|AF306828.1|AF306828 Triticum turgidum subsp. dicoccoides clone 465 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1836 Score = 40.1 bits (20), Expect = 4.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 1 gaactgcaaaaacatgttaaatttaggaacagatggtgta 40 ||||| ||||||| | ||| ||||||||||||| |||||| Sbjct: 731 gaactacaaaaacgtcttatatttaggaacagagggtgta 770
>gb|AF306824.1|AF306824 Triticum timopheevii subsp. armeniacum clone 453 cytosolic acetyl-CoA carboxylase gene, partial cds Length = 1812 Score = 40.1 bits (20), Expect = 4.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 1 gaactgcaaaaacatgttaaatttaggaacagatggtgta 40 ||||| ||||||| | ||| ||||||||||||| |||||| Sbjct: 731 gaactacaaaaacgtcttatatttaggaacagagggtgta 770
>gb|AC062039.3| Homo sapiens BAC clone RP11-814A15 from 2, complete sequence Length = 141040 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aacatgttaaatttaggaacagat 34 ||||||||||||||||||| |||| Sbjct: 55230 aacatgttaaatttaggaatagat 55207
>emb|AL954847.17| Zebrafish DNA sequence from clone DKEY-68G8 in linkage group 13, complete sequence Length = 278040 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 accaaacacaatgaatcagatcac 229 ||||||||||||||| |||||||| Sbjct: 242072 accaaacacaatgaaccagatcac 242049
>gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete sequence Length = 184473 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 catggaaccatccaaaccca 201 |||||||||||||||||||| Sbjct: 152795 catggaaccatccaaaccca 152814
>gb|BC087131.1| Rattus norvegicus glutamate-ammonia ligase (glutamine synthase), mRNA (cDNA clone MGC:94942 IMAGE:7112880), complete cds Length = 4157 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 ttcgttcctcacctccagctccat 124 |||||||||| ||||||||||||| Sbjct: 2805 ttcgttcctctcctccagctccat 2782
>ref|NM_017073.2| Rattus norvegicus glutamate-ammonia ligase (glutamine synthase) (Glul), mRNA Length = 4157 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 ttcgttcctcacctccagctccat 124 |||||||||| ||||||||||||| Sbjct: 2805 ttcgttcctctcctccagctccat 2782
>emb|X92074.1|RNGLUSYNI R.norvegicus glutamine synthetase intron 1 Length = 1938 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 ttcgttcctcacctccagctccat 124 |||||||||| ||||||||||||| Sbjct: 1013 ttcgttcctctcctccagctccat 990 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,073,385 Number of Sequences: 3902068 Number of extensions: 3073385 Number of successful extensions: 77767 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77722 Number of HSP's gapped (non-prelim): 45 length of query: 315 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 293 effective length of database: 17,147,199,772 effective search space: 5024129533196 effective search space used: 5024129533196 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)