ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STAG3_MOUSE (O70576) Cohesin subunit SA-3 (Stromal antigen 3) (S... 30 3.5
2STAG3_RAT (Q99M76) Cohesin subunit SA-3 (Stromal antigen 3) (Str... 30 3.5

>STAG3_MOUSE (O70576) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3)|
           (SCC3 homolog 3)
          Length = 1240

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 202 AFF*IHNTTQYPICEPCARIFNHLLKHAKQTSRVTH 309
           AF+  H+ T++ I EPC+R    LL+ A  T  V H
Sbjct: 723 AFYNAHDLTRWEISEPCSR----LLRKAVDTGEVPH 754



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>STAG3_RAT (Q99M76) Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3)|
           (SCC3 homolog 3)
          Length = 1256

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 202 AFF*IHNTTQYPICEPCARIFNHLLKHAKQTSRVTH 309
           AF+  H+ T++ I EPC+R    LL+ A  T  V H
Sbjct: 723 AFYNAHDLTRWEISEPCSR----LLRKAVDTGEVPH 754


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,558,916
Number of Sequences: 219361
Number of extensions: 847633
Number of successful extensions: 1916
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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