ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ODO1_RICPR (Q9ZDY3) 2-oxoglutarate dehydrogenase E1 component (E... 36 0.028
2ODO1_CAEEL (O61199) 2-oxoglutarate dehydrogenase E1 component, m... 35 0.061
3ODO1_CAEBR (Q623T0) 2-oxoglutarate dehydrogenase E1 component, m... 35 0.061
4ODO1_BUCAI (P57388) 2-oxoglutarate dehydrogenase E1 component (E... 34 0.080
5ODO1_BUCBP (Q89AJ7) Oxoglutarate dehydrogenase (EC 1.2.4.2) 34 0.10
6ODO1_ECOLI (P0AFG3) 2-oxoglutarate dehydrogenase E1 component (E... 33 0.14
7ODO1_ECOL6 (P0AFG4) 2-oxoglutarate dehydrogenase E1 component (E... 33 0.14
8ODO1_ECO57 (P0AFG5) 2-oxoglutarate dehydrogenase E1 component (E... 33 0.14
9ODO1_RICCN (Q92J42) 2-oxoglutarate dehydrogenase E1 component (E... 33 0.18
10ODO1_COXBU (P51056) 2-oxoglutarate dehydrogenase E1 component (E... 32 0.40
11ODO1_AZOVI (P20707) 2-oxoglutarate dehydrogenase E1 component (E... 31 0.89
12ODO1_LEPIN (Q8F6S7) 2-oxoglutarate dehydrogenase E1 component (E... 30 2.0
13ODO1_LEPIC (Q72PJ7) 2-oxoglutarate dehydrogenase E1 component (E... 30 2.0
14TNF10_HUMAN (P50591) Tumor necrosis factor ligand superfamily me... 30 2.0
15ODO1_MACFA (Q60HE2) 2-oxoglutarate dehydrogenase E1 component, m... 29 2.6
16ODO1_GEOKA (Q5L172) 2-oxoglutarate dehydrogenase E1 component (E... 29 2.6
17ODO1_RALEU (Q59106) 2-oxoglutarate dehydrogenase E1 component (E... 29 3.4
18ODO1_PONPY (Q5RCB8) 2-oxoglutarate dehydrogenase E1 component, m... 29 3.4
19ATU_DROME (Q94546) Another transcription unit protein 29 3.4
20ODO1_MOUSE (Q60597) 2-oxoglutarate dehydrogenase E1 component, m... 28 4.4
21GLGA_BACST (O08328) Glycogen synthase (EC 2.4.1.21) (Starch [bac... 28 5.7
22ODO1_BACLD (Q65IH4) 2-oxoglutarate dehydrogenase E1 component (E... 28 5.7
23ODO1_BACSU (P23129) 2-oxoglutarate dehydrogenase E1 component (E... 28 7.5
24MTMR3_MOUSE (Q8K296) Myotubularin-related protein 3 (EC 3.1.3.48) 27 9.8
25CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interacto... 27 9.8

>ODO1_RICPR (Q9ZDY3) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
            (Alpha-ketoglutarate dehydrogenase)
          Length = 936

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -3

Query: 302  DDIKYVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIK 183
            ++ KYVGR  SA+ A G   VH ++Q +L+ +AL  D IK
Sbjct: 893  NEFKYVGREESASPAVGSLQVHNKQQEKLLMEALGDDIIK 932



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>ODO1_CAEEL (O61199) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
            precursor (EC 1.2.4.2) (Alpha-ketoglutarate
            dehydrogenase)
          Length = 1029

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -3

Query: 293  KYVGRAPSAATATGFYTVHVQEQTELVKK 207
            KY GR PS++ ATG    H+QEQ E++ K
Sbjct: 987  KYAGRLPSSSPATGNKFTHMQEQKEMMSK 1015



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>ODO1_CAEBR (Q623T0) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
            precursor (EC 1.2.4.2) (Alpha-ketoglutarate
            dehydrogenase)
          Length = 1027

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -3

Query: 293  KYVGRAPSAATATGFYTVHVQEQTELVKK 207
            KY GR PS++ ATG    H+QEQ E++ K
Sbjct: 985  KYAGRLPSSSPATGNKYTHMQEQKEMMSK 1013



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>ODO1_BUCAI (P57388) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 909

 Score = 34.3 bits (77), Expect = 0.080
 Identities = 12/32 (37%), Positives = 24/32 (75%)
 Frame = -3

Query: 296 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
           +KY+GR+ SA+ A G+ ++H ++Q +++  AL
Sbjct: 875 LKYIGRSSSASPAVGYISIHKKQQEKIIYNAL 906



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>ODO1_BUCBP (Q89AJ7) Oxoglutarate dehydrogenase (EC 1.2.4.2)|
          Length = 916

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -3

Query: 296 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
           + YVGR+ SA+ ATG+  +H ++Q +++  AL
Sbjct: 881 LNYVGRSSSASPATGYMKIHKEQQKKIIYDAL 912



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>ODO1_ECOLI (P0AFG3) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 933

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 296 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
           ++Y GR  SA+ A G+ +VH ++Q +LV  AL
Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930



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>ODO1_ECOL6 (P0AFG4) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 933

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 296 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
           ++Y GR  SA+ A G+ +VH ++Q +LV  AL
Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930



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>ODO1_ECO57 (P0AFG5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 933

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 296 IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
           ++Y GR  SA+ A G+ +VH ++Q +LV  AL
Sbjct: 899 LRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 930



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>ODO1_RICCN (Q92J42) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
            (Alpha-ketoglutarate dehydrogenase)
          Length = 928

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -3

Query: 311  GSIDDIKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
            G  ++ KYVGR  SA+ A G   VH ++Q +L++ AL
Sbjct: 890  GIKNEFKYVGREESASPAVGSLQVHNKQQEKLLRTAL 926



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>ODO1_COXBU (P51056) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 934

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = -3

Query: 296 IKYVGRAPSAATATGFYTVHVQEQTELVKKALQ 198
           ++YVGR+  AA A G+  ++V+ Q +LV +AL+
Sbjct: 901 LEYVGRSAFAAPAAGYSALYVKLQEQLVNQALE 933



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>ODO1_AZOVI (P20707) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
            (Alpha-ketoglutarate dehydrogenase)
          Length = 943

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 296  IKYVGRAPSAATATGFYTVHVQEQTELVKKA 204
            ++Y GR  SAA A G+ ++H ++Q +L++ A
Sbjct: 910  LQYAGREASAAPACGYASMHAEQQEKLLQDA 940



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>ODO1_LEPIN (Q8F6S7) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 920

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 290 YVGRAPSAATATGFYTVHVQEQTELVKKALQ 198
           Y GR  S + A G   +H+QEQ +LV  A Q
Sbjct: 889 YAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919



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>ODO1_LEPIC (Q72PJ7) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 920

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 290 YVGRAPSAATATGFYTVHVQEQTELVKKALQ 198
           Y GR  S + A G   +H+QEQ +LV  A Q
Sbjct: 889 YAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919



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>TNF10_HUMAN (P50591) Tumor necrosis factor ligand superfamily member 10|
           (TNF-related apoptosis-inducing ligand) (TRAIL protein)
           (Apo-2 ligand) (Apo-2L) (CD253 antigen)
          Length = 281

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 SAW*EIRSSHGYAKNLHVQNGDLM 189
           ++W   RS H +  NLH++NG+L+
Sbjct: 152 NSWESSRSGHSFLSNLHLRNGELV 175



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>ODO1_MACFA (Q60HE2) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
            precursor (EC 1.2.4.2) (Alpha-ketoglutarate
            dehydrogenase)
          Length = 1023

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 290  YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIKS 180
            Y GR P+AA ATG    H+ E   L+  A   D  K+
Sbjct: 985  YAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDVFKN 1021



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>ODO1_GEOKA (Q5L172) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
            (Alpha-ketoglutarate dehydrogenase)
          Length = 950

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 299  DIKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
            D+ Y+GR   A+ A G   VH +EQ  +++ AL
Sbjct: 914  DVSYIGRRRRASPAEGDPVVHRKEQERIIRCAL 946



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>ODO1_RALEU (Q59106) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 950

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 290 YVGRAPSAATATGFYTVHVQEQTELVKKA 204
           Y GR  SA+ A G+Y  H ++Q  L++ A
Sbjct: 911 YAGRPASASPAVGYYAKHNEQQKALLEAA 939



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>ODO1_PONPY (Q5RCB8) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
            precursor (EC 1.2.4.2) (Alpha-ketoglutarate
            dehydrogenase)
          Length = 1023

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 290  YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIKS 180
            Y GR P+AA ATG    H+ E   L+  A   D  K+
Sbjct: 985  YAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDIFKN 1021



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>ATU_DROME (Q94546) Another transcription unit protein|
          Length = 725

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 193 TPSSPRSERVGSLHSHESF*SPTMQKNNRSKLQPFGE*SLRMCGTARVR 47
           TP SP+S R GSL S +S  SP  +++   + +  G    R  G+A  R
Sbjct: 104 TPESPQSHRSGSLQSRKSG-SPQSRRSGSPQSRKSGSTHSRRSGSAHSR 151



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>ODO1_MOUSE (Q60597) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
            precursor (EC 1.2.4.2) (Alpha-ketoglutarate
            dehydrogenase)
          Length = 1019

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -3

Query: 314  RGSIDDIK---YVGRAPSAATATGFYTVHVQEQTELVKKALQPDPIK 183
            R +ID  K   Y GR P+AA ATG    H+ E    +  A   D  K
Sbjct: 970  RTTIDRAKPVWYAGRDPAAAPATGNKKTHLTELQRFLDTAFDLDAFK 1016



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>GLGA_BACST (O08328) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial|
           glycogen] synthase)
          Length = 485

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 305 IDDIKYVGRAPSAATATGFYTVHVQEQTELVKKALQ 198
           IDD  Y   A    TAT  Y+VH +E+ +L K+ALQ
Sbjct: 249 IDDEFYNPEADPFLTAT--YSVHTRERKQLNKRALQ 282



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>ODO1_BACLD (Q65IH4) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
            (Alpha-ketoglutarate dehydrogenase)
          Length = 944

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 296  IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
            ++Y+GR   ++ A G  TVH +EQ  +V  +L
Sbjct: 909  VRYIGRRRRSSPAEGDPTVHKKEQERIVSDSL 940



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>ODO1_BACSU (P23129) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
            (Alpha-ketoglutarate dehydrogenase)
          Length = 941

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 296  IKYVGRAPSAATATGFYTVHVQEQTELVKKAL 201
            ++Y+GR   ++ A G  TVH +EQ  +V  +L
Sbjct: 906  VQYIGRRRRSSPAEGDPTVHKKEQERIVSDSL 937



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>MTMR3_MOUSE (Q8K296) Myotubularin-related protein 3 (EC 3.1.3.48)|
          Length = 1075

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 302 DDIKYVGRAPSAATATGFYTVHVQEQTELVKKALQ 198
           +  +YVGRA  A  A   Y +H++ +  LV   LQ
Sbjct: 40  ESTEYVGRAEEAIIALSNYRLHIKFKESLVNVPLQ 74



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>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)|
           (Ik3-1)
          Length = 568

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 184 LMGSGCSAFFTSSVCSCTWTV*KPVAVAADGALPTYLISSMLPR 315
           L+ +GC+AF      +  WT       A  G+ P  L  S++PR
Sbjct: 99  LLAAGCNAFSAPGTAAAPWT-------AGSGSSPCPLPPSLVPR 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,133,744
Number of Sequences: 219361
Number of extensions: 784841
Number of successful extensions: 1761
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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