ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
2dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
3dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
4dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 1e-34
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 155 1e-34
6gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence 78 2e-11
7gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence 78 2e-11
8gb|AY103815.1| Zea mays PCO096873 mRNA sequence 70 5e-09
9gb|BT013018.1| Lycopersicon esculentum clone 114256R, mRNA sequence 46 0.070
10gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, comp... 42 1.1
11gb|BT018310.1| Zea mays clone EL01T0206H09.c mRNA sequence 40 4.3
12gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, com... 40 4.3
13emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chro... 40 4.3
14emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on ch... 40 4.3
15emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chr... 40 4.3
16emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 i... 40 4.3
17emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, c... 40 4.3
18dbj|AK130224.1| Homo sapiens cDNA FLJ26714 fis, clone PNC01043 40 4.3
19gb|AY104202.1| Zea mays PCO125624 mRNA sequence 40 4.3 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  155 bits (78), Expect = 1e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                            
Query: 163      ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 222
                ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 19193103 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 19193044

                                                                            
Query: 223      gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 282
                |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 19193043 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 19192984

                                                              
Query: 283      ccgacgtacttgatatcatctatgctgccacgaccgagcgccctca 328
                || ||||| ||||| || |||||  |||| ||||| ||||||||||
Sbjct: 19192983 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgccctca 19192938



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 78       gattattcaccaaatggctg 97
                ||||||||||||||||||||
Sbjct: 19193185 gattattcaccaaatggctg 19193166
to top
>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
            insert sequence
          Length = 3612

 Score =  155 bits (78), Expect = 1e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                        
Query: 163  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 222
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3333 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3274

                                                                        
Query: 223  gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 282
            |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 3273 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 3214

                                                          
Query: 283  ccgacgtacttgatatcatctatgctgccacgaccgagcgccctca 328
            || ||||| ||||| || |||||  |||| ||||| ||||||||||
Sbjct: 3213 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgccctca 3168



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   gattattcaccaaatggctg 97
            ||||||||||||||||||||
Sbjct: 3415 gattattcaccaaatggctg 3396
to top
>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
            insert sequence
          Length = 3581

 Score =  155 bits (78), Expect = 1e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                        
Query: 163  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 222
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3379 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3320

                                                                        
Query: 223  gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 282
            |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 3319 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 3260

                                                          
Query: 283  ccgacgtacttgatatcatctatgctgccacgaccgagcgccctca 328
            || ||||| ||||| || |||||  |||| ||||| ||||||||||
Sbjct: 3259 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgccctca 3214



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   gattattcaccaaatggctg 97
            ||||||||||||||||||||
Sbjct: 3461 gattattcaccaaatggctg 3442
to top
>dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C11, full
            insert sequence
          Length = 1546

 Score =  155 bits (78), Expect = 1e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                        
Query: 163  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 222
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 1314 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 1255

                                                                        
Query: 223  gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 282
            |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 1254 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 1195

                                                          
Query: 283  ccgacgtacttgatatcatctatgctgccacgaccgagcgccctca 328
            || ||||| ||||| || |||||  |||| ||||| ||||||||||
Sbjct: 1194 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgccctca 1149



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   gattattcaccaaatggctg 97
            ||||||||||||||||||||
Sbjct: 1396 gattattcaccaaatggctg 1377
to top
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score =  155 bits (78), Expect = 1e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                          
Query: 163    ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 222
              ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 126625 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 126566

                                                                          
Query: 223    gtttgctcctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggccctt 282
              |||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||
Sbjct: 126565 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatggggccctt 126506

                                                            
Query: 283    ccgacgtacttgatatcatctatgctgccacgaccgagcgccctca 328
              || ||||| ||||| || |||||  |||| ||||| ||||||||||
Sbjct: 126505 ccaacgtatttgatgtcgtctatcgtgccccgaccaagcgccctca 126460



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     gattattcaccaaatggctg 97
              ||||||||||||||||||||
Sbjct: 126707 gattattcaccaaatggctg 126688
to top
>gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence
          Length = 703

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                       
Query: 170 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 229
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 468 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 409

                                                                       
Query: 230 cctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggcccttccgacgt 289
           ||||||| || || | |||||| || ||||| || || || || |||||||| |||||||
Sbjct: 408 cctgcacgtgcaccgagtagaagcccgtagcagtagcagccgacggggccctgccgacgt 349

                  
Query: 290 acttgat 296
           |||||||
Sbjct: 348 acttgat 342
to top
>gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence
          Length = 674

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 105/127 (82%)
 Strand = Plus / Minus

                                                                       
Query: 170 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 229
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 470 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 411

                                                                       
Query: 230 cctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggcccttccgacgt 289
           ||||||| || || | |||||| || ||||| || || || || |||||||| |||||||
Sbjct: 410 cctgcacgtgcaccgagtagaagcccgtagcagtagcagccgacggggccctgccgacgt 351

                  
Query: 290 acttgat 296
           |||||||
Sbjct: 350 acttgat 344
to top
>gb|AY103815.1| Zea mays PCO096873 mRNA sequence
          Length = 1431

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 104/127 (81%)
 Strand = Plus / Minus

                                                                        
Query: 170  ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 229
            ||||||| ||| | |||| ||||||  ||||||||||||||| ||| ||||| || ||||
Sbjct: 1130 ttcagaaagggtagttgagggggtcgcgctgcagcgccttctgcaccagctccgtctgct 1071

                                                                        
Query: 230  cctgcacatggacagtgtagaaacctgtagctgtggctgcagatggggcccttccgacgt 289
            ||||||| || || | |||||| || || || || || || || |||||||| |||||||
Sbjct: 1070 cctgcacgtgcaccgagtagaagcccgtcgcggtagcagccgacggggccctgccgacgt 1011

                   
Query: 290  acttgat 296
            |||||||
Sbjct: 1010 acttgat 1004
to top
>gb|BT013018.1| Lycopersicon esculentum clone 114256R, mRNA sequence
          Length = 3457

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 246  gtagaaacctgtagctgtggctgcaga 272
            ||||||||| |||||||||||||||||
Sbjct: 3141 gtagaaaccagtagctgtggctgcaga 3115
to top
>gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, complete cds
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 49  taacgcgcgcggtaccacaca 69
           |||||||||||||||||||||
Sbjct: 675 taacgcgcgcggtaccacaca 655
to top
>gb|BT018310.1| Zea mays clone EL01T0206H09.c mRNA sequence
          Length = 817

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 184 ttgatggggtctggctgcagcgccttcttcacgagctcggtttgctcctgcacatg 239
           ||||| || |||| |||||| ||||||||||| ||||| |  ||||||||| ||||
Sbjct: 643 ttgatcggctctgcctgcagtgccttcttcactagctctgactgctcctgcgcatg 588
to top
>gb|AC087289.9| Homo sapiens chromosome 17, clone RP11-552F3, complete sequence
          Length = 203765

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   ctgtggctgcagatggggcc 279
             ||||||||||||||||||||
Sbjct: 32852 ctgtggctgcagatggggcc 32833
to top
>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel
              pseudogene, complete sequence
          Length = 204235

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    tcatggctatgcaaagaacc 163
              ||||||||||||||||||||
Sbjct: 122766 tcatggctatgcaaagaacc 122747
to top
>emb|AL358216.33| Human DNA sequence from clone RP11-809C18 on chromosome 10 Contains two
             novel genes, the gene for a novel protein (FLJ38694
             FLJ38681) and five CpG islands, complete sequence
          Length = 96891

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   gtggctgcagatggggccct 281
             ||||||||||||||||||||
Sbjct: 32127 gtggctgcagatggggccct 32146
to top
>emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chromosome 11, complete
             sequence
          Length = 101598

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    accaaatggctgtaatttag 105
             ||||||||||||||||||||
Sbjct: 78854 accaaatggctgtaatttag 78835
to top
>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
              complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aacaaaattatgcactgaaa 27
              ||||||||||||||||||||
Sbjct: 125048 aacaaaattatgcactgaaa 125029
to top
>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence
          Length = 152913

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aacaaaattatgcactgaaa 27
             ||||||||||||||||||||
Sbjct: 71960 aacaaaattatgcactgaaa 71979
to top
>dbj|AK130224.1| Homo sapiens cDNA FLJ26714 fis, clone PNC01043
          Length = 1991

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 gtggctgcagatggggccct 281
           ||||||||||||||||||||
Sbjct: 910 gtggctgcagatggggccct 891
to top
>gb|AY104202.1| Zea mays PCO125624 mRNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 184  ttgatggggtctggctgcagcgccttcttcacgagctcggtttgctcctgcacatg 239
            ||||| || |||| |||||| ||||||||||| ||||| |  ||||||||| ||||
Sbjct: 1545 ttgatcggctctgcctgcagtgccttcttcactagctctgactgctcctgcgcatg 1490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,642,082
Number of Sequences: 3902068
Number of extensions: 2642082
Number of successful extensions: 45663
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45624
Number of HSP's gapped (non-prelim): 39
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top