ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55f01 |
|---|---|
| Clone Library Name | barley_pub |
>MAS_HUMAN (P04201) MAS proto-oncogene| Length = 325 Score = 32.7 bits (73), Expect = 0.42 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +1 Query: 58 LRENIWAKIISPYVLIVIQKYYMLVFLATAMNILQLA-----SRFTNYYHIALVLLPVTS 222 +R+N WA S ++++ + + A M +L L S F N +HI+L+ + S Sbjct: 214 IRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRLLYLLYYEYWSTFGNLHHISLLFSTINS 273 Query: 223 ARAPALF 243 + P ++ Sbjct: 274 SANPFIY 280
>DNAJ_BACHD (Q9KD71) Chaperone protein dnaJ| Length = 370 Score = 32.7 bits (73), Expect = 0.42 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 390 GVLNLSEGRPIRVTKNSRVCTHCHEAAKFISKMCS 286 G LN+ + P N RVC HC K+I C+ Sbjct: 165 GQLNIEQNTPFGRVVNRRVCHHCEGTGKYIKHKCA 199
>DNAJ_BACSU (P17631) Chaperone protein dnaJ| Length = 372 Score = 32.0 bits (71), Expect = 0.71 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -2 Query: 390 GVLNLSEGRPIRVTKNSRVCTHCHEAAKFISKMCS 286 G LN+ + P N RVC HC K I C+ Sbjct: 169 GQLNVEQNTPFGKVVNRRVCHHCEGTGKIIKNKCA 203
>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Length = 1003 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +3 Query: 135 SSNSYEHTAAGKPIH*LLSHSTGAVTSNLCKSTCLVQNDGTCWNPSI*SPC 287 S +++T AG P LLS G V NLC ++ + D WNP+ C Sbjct: 887 SIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMD-PAWNPAAEDQC 936
>THB2_HUMAN (P37243) Thyroid hormone receptor beta-2| Length = 476 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = -1 Query: 445 RSERRITMRSQLEARRRLWGVESVGRAPDPRDKELEGLHSLPRGRQVHIQDVQQGDHIEG 266 R +R + E RRR +S+G P+P D+E E + ++ + H+ QG H Sbjct: 200 RLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTV---TEAHVATNAQGSH--- 253 Query: 265 FQQVPSF 245 ++Q P F Sbjct: 254 WKQKPKF 260
>MAS_RAT (P12526) MAS proto-oncogene| Length = 324 Score = 30.4 bits (67), Expect = 2.1 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +1 Query: 58 LRENIWAKIISPYVLIVIQKYYMLVFLATAMNILQLA-----SRFTNYYHIALVLLPVTS 222 +R+N WA S ++++ + + A M +L L S F N ++I+L+ + S Sbjct: 213 IRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRVLYLLYYEYWSTFGNLHNISLLFSTINS 272 Query: 223 ARAPALF 243 + P ++ Sbjct: 273 SANPFIY 279
>MAS_MOUSE (P30554) MAS proto-oncogene| Length = 324 Score = 30.4 bits (67), Expect = 2.1 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +1 Query: 58 LRENIWAKIISPYVLIVIQKYYMLVFLATAMNILQLA-----SRFTNYYHIALVLLPVTS 222 +R+N WA S ++++ + + A M +L L S F N ++I+L+ + S Sbjct: 213 IRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRVLYLLYYEYWSAFGNLHNISLLFSTINS 272 Query: 223 ARAPALF 243 + P ++ Sbjct: 273 SANPFIY 279
>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1| Length = 1707 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +3 Query: 324 SECKPSSSLSRGSGALPTDSTPQRRRRASSCDRIVI 431 SE +P SS S+ SGA DS Q+R R + + V+ Sbjct: 1424 SEPEPQSSASQSSGASEADSPRQKRPRRQASQKTVV 1459
>DNAJ_BACLD (Q65H55) Chaperone protein dnaJ| Length = 375 Score = 30.0 bits (66), Expect = 2.7 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -2 Query: 390 GVLNLSEGRPIRVTKNSRVCTHCHEAAKFISKMCS 286 G LN+ + P N RVC +C+ K I CS Sbjct: 169 GQLNMEQSTPFGKVVNRRVCHYCNGTGKQIKHKCS 203
>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (RUSH-1) Length = 1005 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 135 SSNSYEHTAAGKPIH*LLSHSTGAVTSNLCKSTCLVQNDGTCWNPS 272 S +++T AG P LLS G V NLC ++ + D WNP+ Sbjct: 890 SIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMD-PAWNPA 934
>RK18_CYAME (Q85FU8) Chloroplast 50S ribosomal protein L18| Length = 109 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -2 Query: 393 FGVLNLSEGRPIRVTKNSRVCTHCHEAAKFISKMCSREIILRDSNRFHHFEQG 235 F + + +G+P+ + S C+H H A+ I M R ++ S +H++QG Sbjct: 6 FVLKRVRQGKPLNKPRLSIFCSHKHIYAQIIDDMVGRTLV---SASTYHYKQG 55
>Y2026_MYCBO (P64920) Hypothetical protein Mb2026c| Length = 285 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +1 Query: 253 EPVGIPQYDLPAAHLGYELG-GLVAVSA 333 +P G+ +YD+ AAH G + G G VA+SA Sbjct: 242 QPPGLARYDIEAAHDGIQAGAGFVAISA 269
>Y2003_MYCTU (P64919) Hypothetical protein Rv2003c/MT2059| Length = 285 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +1 Query: 253 EPVGIPQYDLPAAHLGYELG-GLVAVSA 333 +P G+ +YD+ AAH G + G G VA+SA Sbjct: 242 QPPGLARYDIEAAHDGIQAGAGFVAISA 269
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 29.6 bits (65), Expect = 3.5 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 252 HHFEQGRCSCRGYW*QHQCYVIV 184 HHF RCS RG+W H Y+++ Sbjct: 1213 HHFR--RCSFRGFWLTHHLYILL 1233
>PUR2_STRCO (Q9RKL4) Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS)| (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase) Length = 416 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +3 Query: 348 LSRGSGALPTDSTPQRRRRASSCDRIVIRRSL 443 L+ G G + TD R A++CDR+V+ L Sbjct: 147 LAAGKGVVVTDDVEAARAHANACDRVVVEEFL 178
>HPS5_HUMAN (Q9UPZ3) Hermansky-Pudlak syndrome 5 protein| (Alpha-integrin-binding protein 63) (Ruby-eye protein 2 homolog) (Ru2) Length = 1129 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/73 (31%), Positives = 30/73 (41%) Frame = +1 Query: 196 ALVLLPVTSARAPALFKMMEPVGIPQYDLPAAHLGYELGGLVAVSANPRVLCHADRAPFR 375 A+ L A+A A F M I D L Y G L+ S LC +R F Sbjct: 149 AIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFW 208 Query: 376 QIQHPKGDGELRA 414 +I + + DGE A Sbjct: 209 KIGNKERDGEYGA 221
>THB2_MOUSE (P37244) Thyroid hormone receptor beta-2| Length = 475 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 445 RSERRITMRSQLEARRRLWGVESVGRAPDPRDKELEGLHSLPRGRQVHIQDVQQGDH 275 R +R + E RRR +S+G P+P D+E E + ++ + H+ QG H Sbjct: 199 RLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTV---TEAHVATNAQGSH 252
>NPB_HUMAN (Q8NG41) Neuropeptide B precursor (Preproprotein L7) (hPPL7)| [Contains: Neuropeptide B-23 (NPB23) (hL7); Neuropeptide B-29 (NPB29) (hL7C)] Length = 125 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +1 Query: 220 SARAPALFKMMEPVGIPQYDLPAAHLGYELGGLVAVSANPRVLCHADRA-PFRQIQHPKG 396 +A A AL ++ P G+ Y A H Y +G + + R +A R+ P+R + P G Sbjct: 8 AAAALALCLLLAPPGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPYARRSQPYRGAEPPGG 67 Query: 397 DG 402 G Sbjct: 68 AG 69
>DNAJ_BACSH (O69269) Chaperone protein dnaJ| Length = 368 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -2 Query: 390 GVLNLSEGRPIRVTKNSRVCTHCHEAAKFISKMCS 286 G +N + P N R CT CH K I + CS Sbjct: 162 GQINQAVDTPFGRMMNRRSCTTCHGTGKIIKEKCS 196
>THB2_RAT (P37826) Thyroid hormone receptor beta-2| Length = 514 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 445 RSERRITMRSQLEARRRLWGVESVGRAPDPRDKELEGLHSLPRGRQVHIQDVQQGDH 275 R +R + E RRR +S+G P+P D+E E + ++ + H+ QG H Sbjct: 238 RLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTV---TEAHVATNAQGSH 291
>THB1_RAT (P18113) Thyroid hormone receptor beta-1| Length = 461 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 445 RSERRITMRSQLEARRRLWGVESVGRAPDPRDKELEGLHSLPRGRQVHIQDVQQGDH 275 R +R + E RRR +S+G P+P D+E E + ++ + H+ QG H Sbjct: 185 RLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTV---TEAHVATNAQGSH 238
>THB1_MOUSE (P37242) Thyroid hormone receptor beta-1| Length = 461 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 445 RSERRITMRSQLEARRRLWGVESVGRAPDPRDKELEGLHSLPRGRQVHIQDVQQGDH 275 R +R + E RRR +S+G P+P D+E E + ++ + H+ QG H Sbjct: 185 RLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTV---TEAHVATNAQGSH 238
>THB1_HUMAN (P10828) Thyroid hormone receptor beta-1| Length = 461 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 445 RSERRITMRSQLEARRRLWGVESVGRAPDPRDKELEGLHSLPRGRQVHIQDVQQGDH 275 R +R + E RRR +S+G P+P D+E E + ++ + H+ QG H Sbjct: 185 RLAKRKLIEENREKRRREELQKSIGHKPEPTDEEWELIKTV---TEAHVATNAQGSH 238
>ADA23_HUMAN (O75077) ADAM 23 precursor (A disintegrin and metalloproteinase| domain 23) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 3) (MDC-3) Length = 832 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +3 Query: 219 LCKSTCLVQNDGTCWNPSI*SPCCTSWI*TWRPRGSECK 335 LC C + N C + PCC + ++PRG EC+ Sbjct: 527 LCCKKCSLSNGAHCSD----GPCCNNTSCLFQPRGYECR 561
>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated| protein 5.10) (Ultrahigh sulfur keratin-associated protein 5.10) Length = 202 Score = 28.9 bits (63), Expect = 6.0 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = +3 Query: 195 STGAVTSNLCKSTCLVQNDGTCWNPSI*SPCC 290 S G N CK C G+C S +PCC Sbjct: 136 SCGCSQCNCCKPCCCSSGCGSCCQSSCCNPCC 167
>BLI4_CAEEL (P51559) Endoprotease bli-4 precursor (EC 3.4.21.-) (Blisterase)| (Blistered cuticle protein 4) Length = 943 Score = 28.5 bits (62), Expect = 7.9 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -2 Query: 330 THCHEAAKF-ISKMCSREIILRDSNRFHHFEQGRC 229 +HCH K + + C ++L D + H++ G+C Sbjct: 733 SHCHTCTKAEVCETCPGSLLLIDVDNMPHYDHGKC 767
>TENA_CHICK (P10039) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) Length = 1808 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -2 Query: 324 CHEAAKFISKMCSREIILRDSNRFHHFEQGRCSC-RGY 214 CHE F+ CS++ +D N H GRC C GY Sbjct: 364 CHEG--FVGDDCSQKRCPKDCNNRGHCVDGRCVCHEGY 399
>POL2_BRAV (Q9YK98) RNA2 polyprotein (P2) [Contains: P2A protein; Movement| protein (MP); Coat protein (CP)] Length = 1626 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 220 SARAPALFKMMEPVGIPQYDLPAAHLGYELGGLVAV 327 SA P F + +P AHLG LGGL+AV Sbjct: 293 SATPPVAFATAVASKVVSATMPWAHLGLSLGGLLAV 328
>CSF1_ASHGO (Q74ZX0) Protein CSF1| Length = 2887 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Frame = +1 Query: 157 LQLASRFTNYYHIALVLLPV------TSARAPALFKMMEPVGIP 270 L+ + RF NYY A V L T A LFK++E +GIP Sbjct: 798 LEASLRFLNYYVDAAVSLDSIYFKRHTDIDARTLFKVIEDIGIP 841
>LCE3B_HUMAN (Q5TA77) Late cornified envelope protein 3B (Late envelope protein| 14) Length = 95 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = +3 Query: 228 STCLVQNDGTCWNPSI*SPCCTSWI*TWRPRGSECKPSSSLSRGSG 365 S+C G C PS CC S R + S+S RGSG Sbjct: 34 SSCCAPRPGCCGGPSSEGGCCLSHHRCCRSHRCRRQSSNSCDRGSG 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,146,457 Number of Sequences: 219361 Number of extensions: 1509070 Number of successful extensions: 4305 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4304 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
