ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188339.1| Oryza sativa (japonica cultivar-group), Ozsa809... 109 8e-21
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
3dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
4dbj|AK110817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
5gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete s... 48 0.025
6emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 i... 44 0.39
7emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 i... 44 0.39
8ref|XM_463547.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
9gb|AC131707.3| Mus musculus BAC clone RP24-127O2 from chromosome... 40 6.0
10gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence 40 6.0
11gb|AC092757.2| Homo sapiens chromosome 15 clone RP11-59H7 map 15... 40 6.0
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
13gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 40 6.0
14gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, co... 40 6.0
15emb|BX005311.8| Zebrafish DNA sequence from clone DKEY-45J13 in ... 40 6.0
16dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
17dbj|AP003489.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
18dbj|AK120685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
19gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, comple... 40 6.0
20gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 6.0 
>ref|NM_188339.1| Oryza sativa (japonica cultivar-group), Ozsa8090 predicted mRNA
          Length = 3249

 Score =  109 bits (55), Expect = 8e-21
 Identities = 163/199 (81%)
 Strand = Plus / Minus

                                                                        
Query: 210  accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 269
            |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 3247 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 3188

                                                                        
Query: 270  tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctcgtggcagtgag 329
            |||| || ||||| || |  ||||||||||| ||||||||||| ||||| ||||| ||  
Sbjct: 3187 tcaaaattatctctctaccacacatcttggagatgaacttggcagcctcatggcaatggc 3128

                                                                        
Query: 330  tgcaaaccctcgagttctttgtcacgcggatcgggcgcccttccgacagattcaacaccc 389
            ||||||| || || ||||| ||||| ||||| || |||||||  ||||||||||  || |
Sbjct: 3127 tgcaaactcttgaattcttggtcacacggattggccgcccttgtgacagattcagaacac 3068

                               
Query: 390  caaaggcgacggcgagctt 408
            | || || |||||||||||
Sbjct: 3067 cgaatgccacggcgagctt 3049
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 8e-21
 Identities = 163/199 (81%)
 Strand = Plus / Plus

                                                                           
Query: 210     accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 269
               |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 5763656 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 5763715

                                                                           
Query: 270     tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctcgtggcagtgag 329
               |||| || ||||| || |  ||||||||||| ||||||||||| ||||| ||||| ||  
Sbjct: 5763716 tcaaaattatctctctaccacacatcttggagatgaacttggcagcctcatggcaatggc 5763775

                                                                           
Query: 330     tgcaaaccctcgagttctttgtcacgcggatcgggcgcccttccgacagattcaacaccc 389
               ||||||| || || ||||| ||||| ||||| || |||||||  ||||||||||  || |
Sbjct: 5763776 tgcaaactcttgaattcttggtcacacggattggccgcccttgtgacagattcagaacac 5763835

                                  
Query: 390     caaaggcgacggcgagctt 408
               | || || |||||||||||
Sbjct: 5763836 cgaatgccacggcgagctt 5763854



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 248      tgatggaacctgttggaatccctcaatatgatctccctgc 287
                |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 38430293 tgatggaagcagttggagtctctcagtatgatctccctgc 38430254
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451C06
          Length = 151773

 Score =  109 bits (55), Expect = 8e-21
 Identities = 163/199 (81%)
 Strand = Plus / Plus

                                                                         
Query: 210   accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 269
             |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 88358 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 88417

                                                                         
Query: 270   tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctcgtggcagtgag 329
             |||| || ||||| || |  ||||||||||| ||||||||||| ||||| ||||| ||  
Sbjct: 88418 tcaaaattatctctctaccacacatcttggagatgaacttggcagcctcatggcaatggc 88477

                                                                         
Query: 330   tgcaaaccctcgagttctttgtcacgcggatcgggcgcccttccgacagattcaacaccc 389
             ||||||| || || ||||| ||||| ||||| || |||||||  ||||||||||  || |
Sbjct: 88478 tgcaaactcttgaattcttggtcacacggattggccgcccttgtgacagattcagaacac 88537

                                
Query: 390   caaaggcgacggcgagctt 408
             | || || |||||||||||
Sbjct: 88538 cgaatgccacggcgagctt 88556
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>dbj|AK110817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G05, full
            insert sequence
          Length = 2008

 Score =  101 bits (51), Expect = 2e-18
 Identities = 162/199 (81%)
 Strand = Plus / Minus

                                                                        
Query: 210  accagtaacctctgcaagagcacctgccttgttcaaaatgatggaacctgttggaatccc 269
            |||| |||||||||||||| ||||| |||| ||||||||| || || || || |||||||
Sbjct: 2004 accaataacctctgcaagaacacctaccttcttcaaaatggtgaaatctatttgaatccc 1945

                                                                        
Query: 270  tcaatatgatctccctgctgcacatcttggatatgaacttggcggcctcgtggcagtgag 329
            |||| || ||||| || |  |||| |||||| ||||||||||| ||||| ||||| ||  
Sbjct: 1944 tcaaaattatctctctaccacacaccttggagatgaacttggcagcctcatggcaatggc 1885

                                                                        
Query: 330  tgcaaaccctcgagttctttgtcacgcggatcgggcgcccttccgacagattcaacaccc 389
            ||||||| || || ||||| ||||| ||||| || |||||||  ||||||||||  || |
Sbjct: 1884 tgcaaactcttgaattcttggtcacacggattggccgcccttgtgacagattcagaacac 1825

                               
Query: 390  caaaggcgacggcgagctt 408
            | || || |||||||||||
Sbjct: 1824 cgaatgccacggcgagctt 1806
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>gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete sequence
          Length = 114609

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 241   ttcaaaatgatggaacctgttggaatccctca 272
             ||||||||||||||||||| ||| ||||||||
Sbjct: 36686 ttcaaaatgatggaacctgctggcatccctca 36717
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>emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 in linkage group 5,
             complete sequence
          Length = 188075

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 6     aatgcacctattgattttcacaggat 31
             ||||||||||||||| ||||||||||
Sbjct: 84618 aatgcacctattgatattcacaggat 84593
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>emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 in linkage group 5,
              complete sequence
          Length = 145957

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 6      aatgcacctattgattttcacaggat 31
              ||||||||||||||| ||||||||||
Sbjct: 126708 aatgcacctattgatattcacaggat 126683
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>ref|XM_463547.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 248  tgatggaacctgttggaatccctcaatatgatctccctgc 287
            |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 1514 tgatggaagcagttggagtctctcagtatgatctccctgc 1475
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>gb|AC131707.3| Mus musculus BAC clone RP24-127O2 from chromosome 16, complete sequence
          Length = 174804

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tgcacctattgattttcaca 27
              ||||||||||||||||||||
Sbjct: 130101 tgcacctattgattttcaca 130120
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>gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence
          Length = 169540

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    tctgggccaaaatcatttcc 90
             ||||||||||||||||||||
Sbjct: 35788 tctgggccaaaatcatttcc 35807
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>gb|AC092757.2| Homo sapiens chromosome 15 clone RP11-59H7 map 15q21.3, complete sequence
          Length = 171114

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    gtaacctctgcaagagcacc 233
              ||||||||||||||||||||
Sbjct: 101124 gtaacctctgcaagagcacc 101105
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 295     cttggatatgaacttggcggcctcgtggcagt 326
               ||||||||||||||||| ||| | ||||||||
Sbjct: 4327758 cttggatatgaacttggtggcgttgtggcagt 4327789
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 248   tgatggaacctgttggaatccctcaatatgatctccctgc 287
             |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 23392 tgatggaagcagttggagtctctcagtatgatctccctgc 23353
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>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence
          Length = 224670

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     tctgggccaaaatcatttcc 90
              ||||||||||||||||||||
Sbjct: 205516 tctgggccaaaatcatttcc 205535
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>emb|BX005311.8| Zebrafish DNA sequence from clone DKEY-45J13 in linkage group 6,
            complete sequence
          Length = 40451

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    agaatgcacctattgatttt 23
            ||||||||||||||||||||
Sbjct: 2031 agaatgcacctattgatttt 2012
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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408G07
          Length = 126631

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 248   tgatggaacctgttggaatccctcaatatgatctccctgc 287
             |||||||| | |||||| || |||| ||||||||||||||
Sbjct: 15708 tgatggaagcagttggagtctctcagtatgatctccctgc 15669
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>dbj|AP003489.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0568D10
          Length = 63101

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 295   cttggatatgaacttggcggcctcgtggcagt 326
             ||||||||||||||||| ||| | ||||||||
Sbjct: 19338 cttggatatgaacttggtggcgttgtggcagt 19369
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>dbj|AK120685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164N07, full
            insert sequence
          Length = 3527

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 295  cttggatatgaacttggcggcctcgtggcagt 326
            ||||||||||||||||| ||| | ||||||||
Sbjct: 2308 cttggatatgaacttggtggcgttgtggcagt 2277
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>gb|AC154212.2| Mus musculus BAC clone RP24-120A9 from 16, complete sequence
          Length = 148858

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     tgcacctattgattttcaca 27
             ||||||||||||||||||||
Sbjct: 92504 tgcacctattgattttcaca 92485
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 237     cttgttcaaaatgatggaac 256
               ||||||||||||||||||||
Sbjct: 1875429 cttgttcaaaatgatggaac 1875410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,542,887
Number of Sequences: 3902068
Number of extensions: 3542887
Number of successful extensions: 76378
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76272
Number of HSP's gapped (non-prelim): 106
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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