>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC
             class II antigen (DSB), MHC class II antigen (DYA), MHC
             class II antigen (DYB), MHC class II antigen (DOB),
             transporter 2 ATP-binding cassette sub-family B (TAP2),
             proteasome subunit beta type 8 (PSMB8), transporter 1
             ATP-binding cassette sub-family B (TAP1), proteosome
             subunit beta type 9 (PSMB9), histone H2B-like (H2B), MHC
             class II antigen (DMB), MHC class II antigen (DMA),
             bromodomain containing 2 (BRD2), MHC class II antigen
             (DOA), collagen type XI alpha 2 (COL11A2), retinoid X
             receptor beta (RXRB), solute carrier family 39 zinc
             transporter member 7 (HKE4), and hydroxysteroid (17-beta)
             dehydrogenase 8 (HKE6) genes, complete cds; and ring
             finger protein 1 (RING1) gene, partial cds
          Length = 447010

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   ccaaacaaaatccatctgcaa 184
             |||||||||||||||||||||
Sbjct: 60697 ccaaacaaaatccatctgcaa 60677

>gb|AC016705.4|AC016705 Homo sapiens BAC clone RP11-210M15 from 15, complete sequence
          Length = 177964

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   cagcctcttacaaccctgtga 210
             |||||||||||||||||||||
Sbjct: 45462 cagcctcttacaaccctgtga 45482

>gb|AC131303.8| Mus musculus chromosome 1, clone RP24-119O19, complete sequence
          Length = 187110

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ctaaacaaacttgtacagtg 27
             ||||||||||||||||||||
Sbjct: 47329 ctaaacaaacttgtacagtg 47348

>gb|AC129598.4| Mus musculus BAC clone RP23-283O5 from chromosome 18, complete sequence
          Length = 213381

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    tgtacttagtgtaacatata 148
              ||||||||||||||||||||
Sbjct: 160590 tgtacttagtgtaacatata 160609

>gb|AC123556.4| Mus musculus BAC clone RP23-176M9 from 1, complete sequence
          Length = 198900

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     ctaaacaaacttgtacagtg 27
             ||||||||||||||||||||
Sbjct: 74500 ctaaacaaacttgtacagtg 74481

>gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, complete sequence
          Length = 216911

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tgtacttagtgtaacatata 148
              ||||||||||||||||||||
Sbjct: 139505 tgtacttagtgtaacatata 139486

>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence
          Length = 121763

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   aaaatccatctgcaaacaaa 189
             ||||||||||||||||||||
Sbjct: 22189 aaaatccatctgcaaacaaa 22208

>gb|AC135197.1| Rattus norvegicus BAC CH230-348O5 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 176608

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tgtaacatatagcacctttg 157
              ||||||||||||||||||||
Sbjct: 111764 tgtaacatatagcacctttg 111745

>gb|DQ446312.1| Arabidopsis thaliana clone pENTR221-At1g31530
           endonuclease/exonuclease/phosphatase family protein
           (At1g31530) mRNA, complete cds
          Length = 1066

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   gagagctaaacaaacttgta 22
           ||||||||||||||||||||
Sbjct: 173 gagagctaaacaaacttgta 154

>emb|AL590490.11| Human DNA sequence from clone RP11-177F11 on chromosome 1 Contains
            part of the FMN2 gene for formin 2 and a novel gene,
            complete sequence
          Length = 51770

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  agcctcttacaaccctgtga 210
            ||||||||||||||||||||
Sbjct: 4781 agcctcttacaaccctgtga 4762

>emb|AL512452.7| Human DNA sequence from clone RP11-520F22 on chromosome 13, complete
              sequence
          Length = 141913

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    ccaaacaaaatccatctgca 183
              ||||||||||||||||||||
Sbjct: 118561 ccaaacaaaatccatctgca 118580

>emb|CR385081.7| Zebrafish DNA sequence from clone CH211-59O9 in linkage group 25,
             complete sequence
          Length = 182806

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   caccaaacaaaatccatctg 181
             ||||||||||||||||||||
Sbjct: 48481 caccaaacaaaatccatctg 48500

>gb|AC154350.3| Mus musculus BAC clone RP23-225B15 from chromosome 13, complete
             sequence
          Length = 213847

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     gagctaaacaaacttgtacagtgg 28
             |||||||||||||||| |||||||
Sbjct: 95128 gagctaaacaaacttgaacagtgg 95151

>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence
          Length = 197907

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      agctaaacaaacttgtacag 25
              ||||||||||||||||||||
Sbjct: 113898 agctaaacaaacttgtacag 113917

>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC
             library) complete sequence
          Length = 123203

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   accaccaaacaaaatccatc 179
             ||||||||||||||||||||
Sbjct: 17945 accaccaaacaaaatccatc 17964

>gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complete sequence
          Length = 106117

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   atgtacttagtgtaacatat 147
             ||||||||||||||||||||
Sbjct: 11126 atgtacttagtgtaacatat 11107

>gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L23, complete sequence
          Length = 221027

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   atgtacttagtgtaacatat 147
             ||||||||||||||||||||
Sbjct: 11805 atgtacttagtgtaacatat 11786

>gb|AC074360.5|AC074360 Arabidopsis thaliana chromosome 1 BAC F27M3 genomic sequence, complete
             sequence
          Length = 110664

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     gagagctaaacaaacttgta 22
             ||||||||||||||||||||
Sbjct: 97202 gagagctaaacaaacttgta 97183

>gb|AC027135.6|AC027135 Arabidopsis thaliana chromosome 1 BAC T8E3 genomic sequence, complete
             sequence
          Length = 80139

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gagagctaaacaaacttgta 22
             ||||||||||||||||||||
Sbjct: 44892 gagagctaaacaaacttgta 44911

>gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete sequence
          Length = 161617

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   atgtacttagtgtaacatat 147
             ||||||||||||||||||||
Sbjct: 92468 atgtacttagtgtaacatat 92449

>emb|AL749540.1|CNS08C9Q Human chromosome 14 DNA sequence Partial sequence from BAC R-183K10 of
             library RPCI-11 from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 96308

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   atgtacttagtgtaacatat 147
             ||||||||||||||||||||
Sbjct: 69891 atgtacttagtgtaacatat 69872

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 33      acagagcccccgccacatcc 52
               ||||||||||||||||||||
Sbjct: 5686082 acagagcccccgccacatcc 5686101

>dbj|AP000522.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c4G1
          Length = 37693

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   atgtacttagtgtaacatat 147
             ||||||||||||||||||||
Sbjct: 12392 atgtacttagtgtaacatat 12411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,770,039
Number of Sequences: 3902068
Number of extensions: 1770039
Number of successful extensions: 136563
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136488
Number of HSP's gapped (non-prelim): 75
length of query: 226
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 204
effective length of database: 17,147,199,772
effective search space: 3498028753488
effective search space used: 3498028753488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)