ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl55e09 |
|---|---|
| Clone Library Name | barley_pub |
>NX22A_BRARE (Q90481) Homeobox protein Nkx-2.2a (Homeobox protein NK-2 homolog| B) Length = 269 Score = 32.7 bits (73), Expect = 0.23 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Frame = +3 Query: 48 TTERKEDTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSH 215 T+ D+ K +R+V T LE + + R+ PE ++L TPTQ Sbjct: 115 TSSNGSDSGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKI 171 Query: 216 LFLHHRFLSKKASSWKGVGRDH 281 F +HR+ K+A + KG+ H Sbjct: 172 WFQNHRYKMKRARAEKGMEVTH 193
>HNK2_XENLA (P42587) Homeobox protein XENK-2| Length = 196 Score = 31.6 bits (70), Expect = 0.52 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Frame = +3 Query: 66 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 233 D+ K +R+V T LE + + R+ PE ++L TPTQ F +HR Sbjct: 65 DSGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 121 Query: 234 FLSKKASSWKGV 269 + K+A S KG+ Sbjct: 122 YKMKRARSEKGM 133
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 31.2 bits (69), Expect = 0.68 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 78 KAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSK 245 K +R+V T LE + + R+ PE ++L TPTQ F +HR+ +K Sbjct: 545 KRKRRVLFTKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTK 601 Query: 246 KASSWKGVGRDHCISRGH 299 +A + KG + GH Sbjct: 602 RAQNEKGYEGHPGLLHGH 619
>NKX22_MOUSE (P42586) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)| Length = 273 Score = 30.0 bits (66), Expect = 1.5 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +3 Query: 66 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 233 D K +R+V T LE + + R+ PE ++L TPTQ F +HR Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180 Query: 234 FLSKKASSWKGV 269 + K+A + KG+ Sbjct: 181 YKMKRARAEKGM 192
>NKX22_MESAU (P43697) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)| Length = 273 Score = 30.0 bits (66), Expect = 1.5 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +3 Query: 66 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 233 D K +R+V T LE + + R+ PE ++L TPTQ F +HR Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180 Query: 234 FLSKKASSWKGV 269 + K+A + KG+ Sbjct: 181 YKMKRARAEKGM 192
>NKX22_HUMAN (O95096) Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B)| Length = 273 Score = 30.0 bits (66), Expect = 1.5 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +3 Query: 66 DTTCKAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNP----TPTQTSHLFLHHR 233 D K +R+V T LE + + R+ PE ++L TPTQ F +HR Sbjct: 124 DAGKKRKRRVLFSKAQTYELER---RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 180 Query: 234 FLSKKASSWKGV 269 + K+A + KG+ Sbjct: 181 YKMKRARAEKGM 192
>RPSC_ANASP (Q03066) RNA polymerase sigma-C factor| Length = 416 Score = 28.5 bits (62), Expect = 4.4 Identities = 20/67 (29%), Positives = 30/67 (44%) Frame = +3 Query: 78 KAERQVTSETGNTPTLEHARLKDKSMRH*KGPEIQYLNPTPTQTSHLFLHHRFLSKKASS 257 KA+R++ E G TPTLE ++ L+ TPTQ + L + + S Sbjct: 267 KAQRKIAQEKGRTPTLEDLAIE--------------LDMTPTQVREVLLR---VPRSVSL 309 Query: 258 WKGVGRD 278 VG+D Sbjct: 310 ETKVGKD 316
>HISX_BLOFL (Q7VQX0) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 437 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -2 Query: 288 RCNDLSQLPSMMRPFLTKNGGVRIDVKFVL 199 RC+ QL + RP N + +DVK++L Sbjct: 14 RCSISEQLTLLTRPINKHNNSIHLDVKYIL 43
>FDHE_AQUAE (O67150) Protein fdhE homolog| Length = 283 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -1 Query: 262 FHDEAFFDKKRWCKNRCEVC 203 F D+ F+ +RW KN C VC Sbjct: 151 FADKVKFEHERWFKNYCPVC 170
>DCAK1_HUMAN (O15075) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)| (Doublecortin-like and CAM kinase-like 1) Length = 740 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +3 Query: 108 GNTPTLEHARLKDKSMRH*KGPEIQYLNPTPTQTSHLFLHHRFLSKKASSWK 263 G LEH +DK+ R+ +G + L P+PT ++H + + SS K Sbjct: 4 GRDMELEHFDERDKAQRYSRGSRVNGL-PSPTHSAHCSFYRTRTLQTLSSEK 54
>DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)| (Doublecortin-like and CAM kinase-like 1) Length = 756 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +3 Query: 108 GNTPTLEHARLKDKSMRH*KGPEIQYLNPTPTQTSHLFLHHRFLSKKASSWK 263 G LEH +DK+ R+ +G + L P+PT ++H + + SS K Sbjct: 4 GRDMELEHFDERDKAQRYSRGSRVNGL-PSPTHSAHCSFYRTRTLQTLSSEK 54
>HSDR_STAAN (Q7A801) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 27.3 bits (59), Expect = 9.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -1 Query: 250 AFFDKKRWCKNRCEV 206 +F DKK WCKN+ +V Sbjct: 95 SFLDKKSWCKNKFQV 109
>HSDR_STAAM (Q99X26) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I| restriction enzyme R protein) Length = 929 Score = 27.3 bits (59), Expect = 9.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -1 Query: 250 AFFDKKRWCKNRCEV 206 +F DKK WCKN+ +V Sbjct: 95 SFLDKKSWCKNKFQV 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,381,292 Number of Sequences: 219361 Number of extensions: 1012081 Number of successful extensions: 2849 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2849 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
