ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl55e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR1_CHV9D (Q04543) Serine/threonine-protein kinase (EC 2.7.11.1) 29 3.4
2MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Ac... 28 5.8

>KR1_CHV9D (Q04543) Serine/threonine-protein kinase (EC 2.7.11.1)|
          Length = 345

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 22  FPVNITRYKYYGLTGNLAT 78
           +PV+IT+ KYYG  G +AT
Sbjct: 186 YPVDITQNKYYGWAGTIAT 204



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>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking|
            family 7)
          Length = 5327

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 283  AELKDKLARHLSCLQSAVSQIASFSDKI 200
            A++KD++ +    L  AVSQ A F DKI
Sbjct: 3802 AQIKDEVRQRALALDEAVSQSAQFHDKI 3829


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,433,869
Number of Sequences: 219361
Number of extensions: 417042
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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